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Protein Overview: gi|39996918, gi|...

General Information:
Name(s) found: gi|39996918 [NCBI NR]
gi|39983806 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|39996918|ref|NP_952869.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA] [NCBI NR]
  • gi|39983806|gb|AAR35196.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA] [NCBI NR]
    • Organism: Geobacter sulfurreducens PCA
    Length: 295 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA recombination [ISSLink to PubMed article]
    DNA integration [ISSLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQHLDLFLG YLVVEKGLAR NSVESYARDL SRYLGYVEQH AGGDPAAIRP LHVADFLAHL  60
   61 KESGLGARSR ARALSAVRMF HRFLLVEGYA ETNPTSIIEA PRVLAKLPQV LTGREVEMLL 120
  121 AAPAGDAPIE VRDRAMLELL YATGLRVSEL VGLRTRDVNT SAGYLMTVGK GEKERLVPMG 180
  181 ESACAAVVLY LSSARIQLGR GGESPFLFLS RLGERMTRQA FWNIIKKRSR QAGILKGISP 240
  241 HTLRHSFATH LLENGADLRS VQAMLGHADL STTQIYTHVT RERLKRLHEQ FHPRG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..295] PSI-BLAST 54.221849 SITE-SPECIFIC RECOMBINASE, XERD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • site-specific recombinase activity
    		•  4.99325011803106 bayes_pls_golite062009
  • integrase activity
    		•  3.60695091575172 bayes_pls_golite062009
  • catalytic activity
    		•  2.22520758916604 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.11292854906722 bayes_pls_golite062009
  • DNA binding
    		•  0.10970863758177 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.06580979261817 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle