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Protein Overview: gi|30259810, gi|...

General Information:
Name(s) found: gi|30265133 [NCBI NR]
gi|30259810 [NCBI NR]
Description(s) found:
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  • gi|30265133|ref|NP_847510.1| ribonuclease R [Bacillus anthracis str. Ames] [NCBI NR]
  • gi|30259810|gb|AAP28996.1| ribonuclease R [Bacillus anthracis str. Ames] [NCBI NR]
  • ribonuclease R [Bacillus anthracis str. Sterne]gi|47778388|ref|YP_021992.2| ribonuclease R [Bacillus anthracis str. 'Ames Ancestor']gi|30265133|ref|NP_847510.1| ribonuclease R [Bacillus anthracis str. Ames]gi|21397569|ref|NP_653554.1| RNB, RNB-like pro [nrdb_11152004_Chlamydomonas]
  • ribonuclease R [Bacillus anthracis str. Ames] [nr-271106-contam.fasta]
    • Organism: Bacillus anthracis str. Ames
    Length: 808 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA processing [ISSLink to PubMed article]
    Molecular Function: ribonuclease R activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEIIQEHID KLLLFMREEA YKPLTIQELE EAFGIEGSEG FKDFVKALVT MEEKGLVIRT  60
   61 RSNRYGLPEK MNLIRGKLIG HARGFAFVVP DEKKTGDDDL FIPPTELNGA LHGDTVLARL 120
  121 SSQSSGSRQE GSIVRILERG TKELVGTYTE SKNFGFVIPD NKRWTSDIFV LKSASMGAVE 180
  181 GHKVVVKITS YPENRLSAEG EVIQILGHKN DPGVDILSVI HKHHLPLAFP EEVMEHANSV 240
  241 PETISEEDLK DRRDLRDQMI VTIDGADAKD LDDAVTVTKL ENGNYKLGVH IADVSHYVQE 300
  301 GSPIDVEAAE RATSVYLVDR VIPMIPHRLS NGICSLNPKV DRLTLSCEME INNLGDVVKH 360
  361 EIFQSVIKTT ERMTYADVRS ILEDEDEELM KRYEPLVPMF KEMGQLAQIL REKRMRRGAI 420
  421 DFDFKEAKVL VDEEGKPTDV VMRDRSVSEK LIEEFMLVAN ETVAEHFHWM NVPFMYRVHE 480
  481 DPKEDKLERF FEFVTNFGYA VKGRANEVHP RALQQILEMV QGQPEEVVIS TVMLRSMKQA 540
  541 RYDADSLGHF GLSTEFYTHF TSPIRRYPDT IVHRLIREYI INGKVDNETQ AKWREKLPEI 600
  601 AEHSSNMERR AVEAERETDE LKKAEYMLDK IGEEYDGMIS SVTNFGLFVE LPNTIEGLVH 660
  661 VSYLTDDYYR YDEQHFAMIG ERTGNVFRIG DEITIRVINV NKDERAIDFE IVGMKGTPRR 720
  721 KFKDRPVVIE QPRTGRKKRG GRSERSNERG GERGTGRKFD RGGKGKGRGS ASASTSASQP 780
  781 GKKDGNGKKK KAFFENVPGF KKKKKKRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..720] PSI-BLAST 111.0 No description for 2ix0A was found.
    2 View Details [721..808] MSA 1.433996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.50222432647158 bayes_pls_golite062009
  • binding
    		•  2.45645422079711 bayes_pls_golite062009
  • ribonuclease activity
    		•  2.29464134578835 bayes_pls_golite062009
  • DNA binding
    		•  2.01509187496805 bayes_pls_golite062009
  • RNA binding
    		•  0.764074810825563 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.645338044440112 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.645324285187609 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.645324285187609 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.625278911312822 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.593594938681299 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.579049615800331 bayes_pls_golite062009
  • hydrolase activity
    		•  0.184672913742179 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.00505175337890207 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle