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Protein Overview: gi|50123109, gi|...

General Information:
Name(s) found: gi|50123109 [NCBI NR]
gi|49613635 [NCBI NR]
Description(s) found:
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  • gi|50123109|ref|YP_052276.1| uroporphyrinogen-III synthase [Pectobacterium atrosepticum SCRI1043] [NCBI NR]
  • gi|49613635|emb|CAG77086.1| uroporphyrinogen-III synthase [Pectobacterium atrosepticum SCRI1043] [NCBI NR]
  • uroporphyrinogen-III synthase [Erwinia carotovora subsp. atroseptica SCRI1043]gi|49613635|emb|CAG77086.1| uroporphyrinogen-III synthase [Erwinia carotovora subsp. atroseptica SCRI1043] [nrdb_11152004_Chlamydomonas]
  • uroporphyrinogen-III synthase [Erwinia carotovora subsp. atroseptica SCRI1043] [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • uroporphyrinogen-III synthetase [Erwinia carotovora subsp. atroseptica SCRI1043] [nr-271106-contam.fasta]
    • Organism: Pectobacterium atrosepticum SCRI1043
    Length: 246 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTILVTRPSP TGEQLVTRLR KLGYHAWHSP LIEFSPGREL AGLPAQLHAL HADDLVFALS  60
   61 QHAIHYADPM LARTGTSWPA HLAYYAIGRT TALALHKISA HPVTYPPERE TSETLLQLPE 120
  121 LQDVAGKRAL LLRGNGGREL LGETLIERGA QVTYCECYQR RDVHYDGPEQ SRHWQQIGID 180
  181 KLVITSGEML QRIYTLVPDY YRASWLLGCQ LIVVSERLAE QARQLGWRDI RVADNADNDA 240
  241 LVRALQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..246] PSI-BLAST 44.522879 Uroporphyrinogen III synthase (U3S, HemD)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • uroporphyrinogen-III synthase activity
    		•  3.19339392327514 bayes_pls_golite062009
  • catalytic activity
    		•  1.50868196926865 bayes_pls_golite062009
  • hydro-lyase activity
    		•  0.850411184249311 bayes_pls_golite062009
  • lyase activity
    		•  0.0536528882085157 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle