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Protein Overview: gi|11348401, gi|...

General Information:
Name(s) found: gi|4887207 [NCBI NR]
gi|11348401 [NCBI NR]
Description(s) found:
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  • gi|4887207|gb|AAD32234.1|AF147448_5 penicillin-binding protein 5 [Pseudomonas aeruginosa] [NCBI NR]
  • pir||C83146 D-ala-D-ala-carboxypeptidase PA3999 [imported] - Pseudomonas aeruginosa (strain PAO1) [NCBI NR]
  • D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1]gi|9950191|gb|AAG07386.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1]gi|4887207|gb|AAD32234.1| penicillin-binding protein 5 [Pseudomonas aeruginosa]gi|11348401|pir||C83146 D-ala-D [nrdb_11152004_Chlamydomonas]
  • 2|D-ala-D-ala-carboxypeptidase [P_aeruginosa_combined.faa]
  • D-ala-D-ala-carboxypeptidase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dacC PE=3 SV=1 [uniprot-Pseudomonas_aeruginosa.fasta]
    • Organism: Pseudomonas aeruginosa
    Length: 386 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNITTIAKRL SLLVLFIAPT AGWAAESMVP APPQLAAKSY VLMDGESGQV LVENNGDQRL  60
   61 PPASLTKLMT AYIATKEIEA GRIGENDLVT VSEHAWRTGG SRMFIKVGSQ VSVSDLLHGI 120
  121 IIQSGNDASV ALAEHIAGSE DAFADMMNTT AQKLGLTNSH FMDATGLPNP DHYSSARDMA 180
  181 VLARAIIYGE PSHYAIYAQK EFLWNNIKQP NRNLLLWRDK TVDGLKTGHT DEAGYCLVAS 240
  241 AVRDGQRMIA VVFGTNSEQA RAAETQKLLT YGFRFFESRN FYKKGTELTK GLVWKGSEHE 300
  301 VKAGLAEDLT MTLPRGQMQK LQASMVLEPQ LMAPIQQGQV IGKVEVKLDD KVIRSADLVA 360
  361 LNAVEEGGFF RRLWDSIRLF FYGLFN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..386] PSI-BLAST 97.69897 The crystal structure of wild type penicillin-binding protein 5 from E. coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • drug binding
    		•  3.43867028493374 bayes_pls_golite062009
  • peptidase activity
    		•  3.14503902416546 bayes_pls_golite062009
  • serine-type D-Ala-D-Ala carboxypeptidase activity
    		•  3.12650314537616 bayes_pls_golite062009
  • penicillin binding
    		•  2.89507018520983 bayes_pls_golite062009
  • hydrolase activity
    		•  2.80171403488139 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  2.78480589579188 bayes_pls_golite062009
  • serine-type carboxypeptidase activity
    		•  2.70174066798582 bayes_pls_golite062009
  • serine-type exopeptidase activity
    		•  2.69091897402517 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  1.96547160092829 bayes_pls_golite062009
  • catalytic activity
    		•  1.85492008367309 bayes_pls_golite062009
  • serine hydrolase activity
    		•  1.69122379434116 bayes_pls_golite062009
  • serine-type peptidase activity
    		•  1.6885532900392 bayes_pls_golite062009
  • exopeptidase activity
    		•  1.24775184094433 bayes_pls_golite062009
  • binding
    		•  1.11566650386305 bayes_pls_golite062009
  • protein binding
    		•  0.0666688846338231 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle