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Protein Overview: gi|9950558, gi|1...

General Information:
Name(s) found: gi|9950558 [NCBI NR]
gi|15599529 [NCBI NR]
Description(s) found:
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  • gi|9950558|gb|AAG07721.1|AE004849_8 probable fumarase [Pseudomonas aeruginosa PAO1] [NCBI NR]
  • gi|15599529|ref|NP_253023.1| fumarase [Pseudomonas aeruginosa PAO1] [NCBI NR]
  • probable fumarase [Pseudomonas aeruginosa PAO1]gi|9950558|gb|AAG07721.1| probable fumarase [Pseudomonas aeruginosa PAO1]gi|32039544|ref|ZP_00137816.1| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Pseudomonas [nrdb_11152004_Chlamydomonas]
  • probable fumarase [Pseudomonas aeruginosa PAO1] [nr-271106-contam.fasta]
  • fumarase [Pseudomonas aeruginosa PAO1] [S_aureus_NCTC8325_and_P_aeruginosa_PAO1-UW_12-22-2012_contam.fasta]
  • fumarase[Pseudomonas aeruginosa PAO1 PAO1-UW] [P_aeruginosa_PAO1_PGD-contam.fasta]
    • Organism: Pseudomonas aeruginosa PAO1
    Length: 507 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVIKQDDLI QSVADALQFI SYYHPVDFIQ AMHEAYLREE SPAARDSMAQ ILINSRMCAT  60
   61 GHRPICQDTG IVTVFVRVGM DVRWDGATMS VDDMINEGVR RAYNLPENVL RASILADPAG 120
  121 ARKNTKDNTP AVIHYSIVPG DKVEVDVAAK GGGSENKSKM AMLNPSDSIV DWVLKTVPTM 180
  181 GAGWCPPGML GIGIGGTAEK AAVMAKEVLM DPIDIHELKA RGPQNRIEEL RLELFEKVNQ 240
  241 LGIGAQGLGG LTTVLDVKIM DYPTHAASLP VCMIPNCAAT RHAHFVLDGS GPAELEAPSL 300
  301 DAYPEIVWEA GPSARRVDLD KITPEEVQSW KPGETLLLNG KMLTGRDAAH KRMVDMLNKG 360
  361 ETLPVDLKGR FIYYVGPVDP VGDEVVGPAG PTTATRMDKF TRQILEQTGL LGMIGKSERG 420
  421 PIAIEAIKDN KAVYLMAVGG AAYLVAQAIK KSKVLAFAEL GMEAIYEFEV KDMPVTVAVD 480
  481 TNGESVHITG PAVWQKKIAE SLAVEVK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] MSA 1.05798 View MSA. No confident structure predictions are available.
    2 View Details [105..301] MSA 1.05795 View MSA. No confident structure predictions are available.
    3 View Details [302..507] PSI-BLAST 61.154902 No description for 2isbA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • fumarate hydratase activity
    		•  4.30776362388359 bayes_pls_golite062009
  • catalytic activity
    		•  1.39167388925 bayes_pls_golite062009
  • hydro-lyase activity
    		•  1.11577769148523 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  0.94294096501279 bayes_pls_golite062009
  • lyase activity
    		•  0.249976345730856 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle