YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|30260328, gi|...

General Information:
Name(s) found: gi|30260328 [NCBI NR]
gi|30253649 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|30260328|ref|NP_842705.1| DNA-directed RNA polymerase subunit alpha [Bacillus anthracis str. Ames] [NCBI NR]
  • gi|30253649|gb|AAP24191.1| DNA-directed RNA polymerase, alpha subunit [Bacillus anthracis str. Ames] [NCBI NR]
  • DNA-directed RNA polymerase [Bacillus cereus ZK]gi|51978552|gb|AAU20102.1| DNA-directed RNA polymerase [Bacillus cereus ZK]gi|49481737|ref|YP_034488.1| DNA-directed RNA polymerase [Bacillus thuringiensis serovar konkukian str. 97-27]gi|49183171|ref|YP_ [nrdb_11152004_Chlamydomonas]
  • DNA-directed RNA polymerase alpha subunit [Bacillus anthracis str. Ames] [nr-271106-contam.fasta]
  • DNA-directed RNA polymerase, alpha subunit [Bacillus anthracis str. Ames] [nr-271106-contam.fasta]
    • Organism: Bacillus anthracis str. Ames
    Length: 314 amino acids

    Gene Ontology:
    Cellular Component: cytosolic DNA-directed RNA polymerase complex [ISS]
    Biological Process: transcription [ISS]
    Molecular Function: DNA-directed RNA polymerase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEIEKPKIE TVELNEDAKY GKFVIEPLER GYGTTLGNSL RRILLSSLPG AAVTAIQIDG  60
   61 VLHEFSTVEG VVEDVTTIIL NLKKLALKIY SEEEKTLEID VQGEGIVTAA DITHDSDVEI 120
  121 LNPDLHIATL AKDAHFRVRL TAKRGRGYTP ADANKSEDQP IGVIPIDSIY TPVSRVTYQV 180
  181 EKTRVGQVAN YDKLTLDVWT DGSIGPKEAI SLGAKILTEH LNIFVGLTDE AQNAEIMVEK 240
  241 EEDQKEKVLE MTIEELDLSV RSYNCLKRAG INTVQELANK TEEDMMKVRN LGRKSLEEVK 300
  301 HKLEELGLGL RKDD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..314] PSI-BLAST 88.045757 DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  9.7234602659063 bayes_pls_golite062009
  • RNA polymerase activity
    		•  9.7234602659063 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  7.15121167353057 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  5.00321253017182 bayes_pls_golite062009
  • transferase activity
    		•  4.43019288788219 bayes_pls_golite062009
  • binding
    		•  1.71036005361152 bayes_pls_golite062009
  • catalytic activity
    		•  1.14991565197115 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.912313560512218 bayes_pls_golite062009
  • DNA binding
    		•  0.830570793255009 bayes_pls_golite062009
  • protein binding
    		•  0.224464975113154 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle