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Protein Overview: gi|31792414, gi|...

General Information:
Name(s) found: gi|31792414 [NCBI NR]
gi|31618003 [NCBI NR]
Description(s) found:
Found 5 descriptions.
SHOW ALL
  • gi|31792414|ref|NP_854907.1| RNA polymerase sigma factor SigE [Mycobacterium bovis AF2122/97] [NCBI NR]
  • gi|31618003|emb|CAD94114.1| ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGE [Mycobacterium bovis AF2122/97] [NCBI NR]
    • Organism: Mycobacterium bovis AF2122/97
    Length: 257 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLGGPRVG NTESQLCVAD GDDLPTYCSA NSEDLNITTI TTLSPTSMSH PQQVRDDQWV  60
   61 EPSDQLQGTA VFDATGDKAT MPSWDELVRQ HADRVYRLAY RLSGNQHDAE DLTQETFIRV 120
  121 FRSVQNYQPG TFEGWLHRIT TNLFLDMVRR RARIRMEALP EDYDRVPADE PNPEQIYHDA 180
  181 RLGPDLQAAL ASLPPEFRAA VVLCDIEGLS YEEIGATLGV KLGTVRSRIH RGRQALRDYL 240
  241 AAHPEHGECA VHVNPVR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..257] PSI-BLAST 34.69897 SigmaE factor (RpoE)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription initiation factor activity
    		•  5.71806750193815 bayes_pls_golite062009
  • sigma factor activity
    		•  5.58029806879061 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.67872017549582 bayes_pls_golite062009
  • binding
    		•  1.02634976114785 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle