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Protein Overview: SPD1_ORYSJ

General Information:
Name(s) found: SPD1_ORYSJ [Swiss-Prot]
Description(s) found:
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  • gi|6468656|emb|CAB61629.1| spermidine synthase 1 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|51978966|ref|XP_507360.1| PREDICTED P0492E07.108 gene product [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|51963376|ref|XP_506281.1| PREDICTED P0492E07.108 gene product [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|50508457|dbj|BAD30581.1| spermidine synthase 1 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|222636877|gb|EEE67009.1| hypothetical protein OsJ_23928 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215704592|dbj|BAG94220.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215686355|dbj|BAG87616.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115471679|ref|NP_001059438.1| Os07g0408700 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113610974|dbj|BAF21352.1| Os07g0408700 [Oryza sativa Japonica Group] [NCBI NR]
  • Spermidine synthase 1 OS=Oryza sativa subsp. japonica GN=SPDSYN1 PE=2 SV=1 [Swiss-Prot]
  • PREDICTED P0492E07.108 gene product [Oryza sativa (japonica cultivar-group)]gi|51963376|ref|XP_506281.1| PREDICTED P0492E07.108 gene product [Oryza sativa (japonica cultivar-group)]gi|6468656|emb|CAB61629.1| spermidine synthase 1 [Oryza sativa (japonica [nrdb_11152004_Chlamydomonas]
  • spermidine synthase 1 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • Spermidine synthase 1 (Putrescine aminopropyltransferase 1) (SPDSY 1) [nr-271106-contam.fasta]
  • Os07g0408700 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 323 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEAAAKRA RESGDAAAAG AGEQAGISAV IPGWFSEISP MWPGEAHSLK VEKVLFQGKS  60
   61 DYQNVMVFQS STYGKVLVLD GVIQVTERDE CAYQEMITHL PLCSIKDPKK VLVIGGGDGG 120
  121 VLREVSRHSS VEQIDICEID KMVVDVSKQF FPHLAVGFED PRVSLHIGDG VAFLKNAPEG 180
  181 TYDAVIVDSS DPIGPAQELF EKPFFQSVAR ALRPGGVVCT QAESIWLHMH IIEDIVANCR 240
  241 QVFKGSVNYA WTTVPTYPSG VIGFMLCSTE GPTVDFQHPI FNIEDNEFST KSKGPLKFYN 300
  301 SEIHSASFCL PSFAKRVIGS KAN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..323] PSI-BLAST 74.69897 X-RAY STRUCTURE OF SPERMIDINE SYNTHASE FROM ARABIDOPSIS THALIANA GENE AT1G23820

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • spermidine synthase activity
    		•  2.31131562815571 bayes_pls_golite062009
  • transferase activity
    		•  1.77671966857605 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.61435611638306 bayes_pls_golite062009
  • DNA binding
    		•  1.53375495589674 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.31440474302645 bayes_pls_golite062009
  • catalytic activity
    		•  1.25333584501255 bayes_pls_golite062009
  • binding
    		•  0.976078016260105 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  0.837368219068434 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.69697643153076 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  0.644010137949015 bayes_pls_golite062009
  • methyltransferase activity
    		•  0.635463629299812 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  0.57386401278889 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle