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Protein Overview: gi|49328085, gi|...

General Information:
Name(s) found: gi|50931731 [NCBI NR]
gi|49328085 [NCBI NR]
gi|49328062 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|50931731|ref|XP_475393.1| putative polyprotein [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|49328085|gb|AAT58784.1| putative polyprotein [Oryza sativa Japonica Group] [NCBI NR]
  • gi|49328062|gb|AAT58762.1| putative polyprotein [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 1178 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGNENAVAT NQGDSMSKNP PAEAENGAST TSELEKDSNA AKPCRSDMNR EPTKMTSEAT  60
   61 RSWCPIHKTR KHTLQACWVF LNVRAEIRAC KERGIQRISP TRDVYCPIHK TKNHDLSSCK 120
  121 VFSSAMEAPS PKVQQAHIPI RDKDKERGAM PTSDRFVGVI NIDPHELSVL HLLEDYGSST 180
  181 TSAPREVLAI DDVGISACTN AETENQLTTP AQHIRAVNAI MRETPYGTYK RHAIEDDLHA 240
  241 LTQNPGESLR KYIRRFNECR NTILEITDAF VIRAFKSGVR DRYTTQELAT RRITTTRRLF 300
  301 EIVERCAHAD DALRRKNDKP KTEGEKKPAT DAPESSKKKN RKNGKRKAQA EVLAAEYANP 360
  361 PKRPDPQSSN TKKAWCPIHK TNRHSLEDCL VFKKSLEKHI ASEKGKRGAA PKMKWSEQKI 420
  421 EFSEEDHPKT AVIPGRYPIV VEPTIRNIKV ARVLIDGGSS INLLFASTLD AMGIPQSKLT 480
  481 PTDQPFHGIT PQSSSRPLGK ITLPVTFGQA NNFRTEQITF DVAEFDTAYN AIIGRTALAK 540
  541 FMAASHYAYQ VLKMPGPKRI ITIQGNAKLE VQCDKRSLDM VKQTPSPPAT TEPPKKPSDM 600
  601 PGVPREVIEH KLMVQPDAKP VKQRLRRFAP DRKQAIREVL HPEWLANPVM VRKANGKWRM 660
  661 YVDFTDLNKA CPKDHFPLPR IDQLVDSIAV CELLSFLDAY SGYYQISMAK EDEEKTSFIM 720
  721 PFGVFCYVKM PFGLITAGNT FQRTVQGALS DQLGNNVEAY VDDIVVKTKT CDSLIDDLWE 780
  781 TFDNLRRYRL MLNPEKCTFG VPSGKLLGFL VSGRGIEANP EKIKAIENMK SPTRLKEVQK 840
  841 LTGCMAALSR KPKRHSLHSS ATYQPPVLVA PQPNEELFLY IAATPYSVST IIVVEREKVQ 900
  901 RPIYYISEAL HDAKTRYPQI QKLIYAVIMT SRKLRHYFQA HRVTVVSSFP LGEVVRNKDV 960
  961 VGRIAKWVFE LSQFDVHFAP RTAIKSQVLA DFVADWTMPD NKSDNQVDNE TWTMAFDGAL1020
 1021 NSQGAGAGFI LMSPSGDQFK HAIHLNFRAT NNTAEYEGLL AGIRAAAALG VKRLIVKGDS1080
 1081 ELVANQVHKD YKCSNPELSK YLAEVRKLEK RFDGIEVRHV YRKDNIEPDD LARRASRREP1140
 1141 LKPGTFLDIL TKPSVKEVSG EVSPDTLSRP RKIDFPEC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..231] PSI-BLAST 32.30103 HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA); HIV-1 capsid protein
    2 View Details [232..354] PSI-BLAST 37.69897 No description for 3dikA was found.
    3 View Details [355..481] PSI-BLAST 5.0 NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1
    4 View Details [482..602] PSI-BLAST 26.39794 CRYSTAL STRUCTURE OF A TETHERED DIMER OF HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR
    5 View Details [603..1178] PSI-BLAST 170.0 No description for 3di6A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle