Protein Overview: gi|113579835, gi...

General Information:
Name(s) found:	gi\|50932737 [NCBI NR] gi\|50932721 [NCBI NR] gi\|49328011 [NCBI NR] gi\|49328003 [NCBI NR] gi\|222632508 [NCBI NR] gi\|215765079 [NCBI NR] gi\|215734991 [NCBI NR] gi\|125595164 [NCBI NR] gi\|115465369 [NCBI NR] gi\|115465353 [NCBI NR] gi\|113579835 [NCBI NR] gi\|113579827 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|50932737\|ref\|XP_475896.1\| putative ribosomal protein L35A [Oryza sativa (japonica cultivar-group)] [NCBI NR] gi\|50932721\|ref\|XP_475888.1\| putative ribosomal protein L35A [Oryza sativa (japonica cultivar-group)] [NCBI NR] gi\|49328011\|gb\|AAT58712.1\| putative ribosomal protein L35A [Oryza sativa Japonica Group] [NCBI NR] gi\|49328003\|gb\|AAT58704.1\| putative ribosomal protein L35A [Oryza sativa Japonica Group] [NCBI NR] gi\|222632508\|gb\|EEE64640.1\| hypothetical protein OsJ_19494 [Oryza sativa Japonica Group] [NCBI NR] gi\|215765079\|dbj\|BAG86776.1\| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR] gi\|215734991\|dbj\|BAG95713.1\| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR] gi\|125595164\|gb\|EAZ35223.1\| hypothetical protein OsJ_018706 [Oryza sativa (japonica cultivar-group)] [NCBI NR] gi\|115465369\|ref\|NP_001056284.1\| Os05g0556900 [Oryza sativa (japonica cultivar-group)] [NCBI NR] gi\|115465353\|ref\|NP_001056276.1\| Os05g0555800 [Oryza sativa (japonica cultivar-group)] [NCBI NR] gi\|113579835\|dbj\|BAF18198.1\| Os05g0556900 [Oryza sativa Japonica Group] [NCBI NR] gi\|113579827\|dbj\|BAF18190.1\| Os05g0555800 [Oryza sativa (japonica cultivar-group)] [NCBI NR] putative ribosomal protein L35A [Oryza sativa (japonica cultivar-group)]gi\|50932721\|ref\|XP_475888.1\| putative ribosomal protein L35A [Oryza sativa (japonica cultivar-group)]gi\|49328011\|gb\|AAT58712.1\| putative ribosomal protein L35A [Oryza sativa (japoni [nrdb_11152004_Chlamydomonas] putative ribosomal protein L35A [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta] Os05g0556900 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta] Os05g0555800 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
Organism:	Oryza sativa Japonica Group
Length:	111 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MKGRQGQRVR LYVRGTILGY KRSKSNQYEN TSLLQIEGVN TKEEVGWYAG KRIAYVYKAK 60 61 TKSNDSTIRC IWGKVTRPHG NSGVVRAKFR SNLPPTSMGK KVRVFMYPSS I

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..111]	PSI-BLAST	21.69897	Solution Structure of the 50S Ribosomal Protein L35AE from Pyrococcus furiosus. Northeast Structural Genomics Consortium Target PfR48.

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
structural constituent of ribosome	8.74976995123472	bayes_pls_golite062009
structural molecule activity	8.17182185344538	bayes_pls_golite062009
translation initiation factor activity	2.68619850021832	bayes_pls_golite062009
nucleic acid binding	2.39500449599674	bayes_pls_golite062009
RNA binding	2.33551163092904	bayes_pls_golite062009
translation regulator activity	2.20347076721097	bayes_pls_golite062009
translation factor activity, nucleic acid binding	2.18748808024313	bayes_pls_golite062009
binding	1.82018436093208	bayes_pls_golite062009
peptidyltransferase activity	1.25473146071242	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	0.588710983191844	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	0.588710983191844	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	0.587833689405549	bayes_pls_golite062009
ligase activity	0.179232439709325	bayes_pls_golite062009
protein binding	0.142220848362339	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle