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Protein Overview: gi|38199849

General Information:
Name(s) found: gi|38199849 [NCBI NR]
Description(s) found:
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  • gi|38199849|emb|CAE49512.1| Putative ECF family RNA polymerase sigma factor [Corynebacterium diphtheriae] [NCBI NR]
  • Putative ECF family RNA polymerase sigma factor [Corynebacterium diphtheriae NCTC 13129]gi|38199849|emb|CAE49512.1| Putative ECF family RNA polymerase sigma factor [Corynebacterium diphtheriae] [nrdb_11152004_Chlamydomonas]
  • Putative ECF family RNA polymerase sigma factor [Corynebacterium diphtheriae] [nr-271106-contam.fasta]
    • Organism: Corynebacterium diphtheriae
    Length: 239 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCQPFCRNL AGFPQNSPAQ STTMTYTHGS ALPSTDDVTI DADVATEELT GTAAFDAGVG  60
   61 DMPSWEELVA QHADSVYRLA FRLSGNQHDA EDLTQETFMR VFRSLKGYQP GTFEGWLHRI 120
  121 TTNLFLDMVR HRAKIRMEAL PEDYERVPGT DMTPEQAYNV SNLDPALQKA LDDLSPDFRV 180
  181 AVVLCDVVGM SYDEIADTLG VKMGTVRSRI HRGRSQLRAH LENQATSDEG AQLLLATGR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..239] PSI-BLAST 32.522879 SigmaE factor (RpoE)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription initiation factor activity
    		•  5.71806750193815 bayes_pls_golite062009
  • sigma factor activity
    		•  5.58029806879061 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.67872017549582 bayes_pls_golite062009
  • binding
    		•  1.02634976114785 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle