Protein Overview: gi|29142798, gi|...

General Information:
Name(s) found:	gi\|29142798 [NCBI NR] gi\|29138430 [NCBI NR]
Description(s) found: Found 4 descriptions. SHOW ALL	gi\|29142798\|ref\|NP_806140.1\| DNA-binding ATP-dependent protease La [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] [NCBI NR] gi\|29138430\|gb\|AAO70000.1\| Lon protease [Salmonella enterica subsp. enterica serovar Typhi Ty2] [NCBI NR]
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	784 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPERSERIE IPVLPLRDVV VYPHMVIPLF VGREKSIRCL EAAMDHDKKI MLVAQKEAST  60
   61 DEPGVNDLFT VGTVASILQM LKLPDGTVKV LVEGLQRARI SALSDNGEHF SAKAEYLDSP 120
  121 AIDEREQEVL VRTAISQFEG YIKLNKKIPP EVLTSLNSID DPARLADTIA AHMPLKLADK 180
  181 QSVLEMSDVN ERLEYLMAMM ESEIDLLQVE KRIRNRVKKQ MEKSQREYYL NEQMKAIQKE 240
  241 LGEMDDAPDE NEALKRKIDA AKMPKEAKEK AEAELQKLKM MSPMSAEATV VRGYIDWMVQ 300
  301 VPWNARSKVK KDLRQAQEIL DTDHYGLERV KDRILEYLAV QSRVNKIKGP ILCLVGPPGV 360
  361 GKTSLGQSIA KATGRKYVRM ALGGVRDEAE IRGHRRTYIG SMPGKLIQKM AKVGVKNPLF 420
  421 LLDEIDKMSS DMRGDPASAL LEVLDPEQNV AFSDHYLEVD YDLSDVMFVA TSNSMNIPAP 480
  481 LLDRMEVIRL SGYTEDEKLN IAKRHLLPKQ IERNALKKGE LTVDDSAIIG IIRYYTREAG 540
  541 VRSLEREISK LCRKAVKQLL LDKSLKHIEI NGDNLHDYLG VQRFDYGRAD SENRVGQVTG 600
  601 LAWTEVGGDL LTIETACVPG KGKLTYTGSL GEVMQESIQA ALTVVRARAE KLGINPDFYE 660
  661 KRDIHVHVPE GATPKDGPSA GIAMCTALVS CLTGNPVRAD VAMTGEITLR GQVLPIGGLK 720
  721 EKLLAAHRGG IKTVLIPFEN KRDLEEIPDN VIADLDIHPV KRIEEVLTLA LQNEPSGMQV 780
  781 VTAK

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..116]	PSI-BLAST	31.522879	Crystal structure of N-terminal domain of E.Coli Lon Protease
2	View Details	[117..493]	FFAS03	4.88	N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone; ClpA, an Hsp100 chaperone, AAA+ modules
3	View Details	[494..583]	PSI-BLAST	6.69897	alpha-domain of ATPase
4	View Details	[584..651]	Pfam	8.251812	No description for PF05362.4 was found. No confident structure predictions are available.
5	View Details	[652..784]	PSI-BLAST	48.154902	Catalytic domain of E.coli Lon protease

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
binding	0.679730538301274	bayes_pls_golite062009
protein binding	0.3997153647519	bayes_pls_golite062009
catalytic activity	0.147263815852997	bayes_pls_golite062009

2

Term	Confidence	Notes
hydrolase activity	2.01016895260654	bayes_pls_golite062009
binding	1.50490858850371	bayes_pls_golite062009
catalytic activity	0.942640875796745	bayes_pls_golite062009
protein binding	0.224801331525112	bayes_pls_golite062009
purine nucleotide binding	0.212617804904722	bayes_pls_golite062009
nucleotide binding	0.208306366193408	bayes_pls_golite062009
purine ribonucleotide binding	0.20666003262166	bayes_pls_golite062009
ribonucleotide binding	0.206647692922152	bayes_pls_golite062009

3

Term	Confidence	Notes
hydrolase activity	2.18454736627863	bayes_pls_golite062009
binding	1.56871478970164	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
purine nucleotide binding	0.428373955572763	bayes_pls_golite062009
purine ribonucleotide binding	0.424644011903671	bayes_pls_golite062009
ribonucleotide binding	0.424583288440993	bayes_pls_golite062009
nucleotide binding	0.422354428195324	bayes_pls_golite062009
protein binding	0.193768631623192	bayes_pls_golite062009
ATP binding	0.04834397972685	bayes_pls_golite062009
adenyl ribonucleotide binding	0.0149501427627318	bayes_pls_golite062009
adenyl nucleotide binding	0.00365326483311895	bayes_pls_golite062009

4

No functions predicted.

5

Term	Confidence	Notes
hydrolase activity	1.18773479836745	bayes_pls_golite062009
catalytic activity	0.878454819018611	bayes_pls_golite062009
peptidase activity	0.677675533122378	bayes_pls_golite062009
structural constituent of ribosome	0.543314877411748	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.444922294492883	bayes_pls_golite062009
binding	0.423668529068616	bayes_pls_golite062009
structural molecule activity	0.278122898090466	bayes_pls_golite062009
ribonuclease activity	0.214389253755211	bayes_pls_golite062009
protein binding	0.214066724623027	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle