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Protein Overview: gi|115345967, gi...

General Information:
Name(s) found: gi|218927356 [NCBI NR]
gi|16120488 [NCBI NR]
gi|15978250 [NCBI NR]
gi|115345967 [NCBI NR]
Description(s) found:
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  • gi|218927356|ref|YP_002345231.1| peptidoglycan synthetase [Yersinia pestis CO92] [NCBI NR]
  • gi|16120488|ref|NP_403801.1| penicillin-binding protein [Yersinia pestis CO92] [NCBI NR]
  • gi|15978250|emb|CAC89008.1| penicillin-binding protein [Yersinia pestis CO92] [NCBI NR]
  • gi|115345967|emb|CAL18831.1| penicillin-binding protein [Yersinia pestis CO92] [NCBI NR]
  • penicillin-binding protein [Yersinia pestis CO92]gi|45440008|ref|NP_991547.1| penicillin-binding protein [Yersinia pestis biovar Medievalis str. 91001]gi|45434863|gb|AAS60424.1| penicillin-binding protein [Yersinia pestis biovar Medievalis str. 91001]g [nrdb_11152004_Chlamydomonas]
  • penicillin-binding protein [Yersinia pestis CO92] [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
    • Organism: Yersinia pestis CO92
    Length: 851 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVKYFLIL AVCCILLGAA SIFGLYKYIE PQLPDVATLK DIRLQTPMQV YSAEGELIAQ  60
   61 FGEKRRIPLT LNQIPPEMVH AFIATEDSRF YDHHGVDPVG ILRAVSIAML SGRASQGAST 120
  121 ITQQLARNFF LSPERTLMRK IKEAFLAIRI EQMLTKDEIL ELYLNKIYLG YRAYGVGAAA 180
  181 QVYFGKEVHE LTLSQIAMIA GLPKAPSTFN PLYSHDRAVA RRNVVLLRML DEKYITQAQY 240
  241 DQARSEELVA NYHVPQIAFS APYLAEMVRQ EMIKRYGENA YTDGYQVYTT ITRKLQLAAV 300
  301 DSLRANVLAY DMRHGYRGPS NVLWKVGESA WSREQIIDSL KALPVYGPLL PAVVTEADAA 360
  361 QATAMLADGS NVTLPMVGIR WARPFKSDNA QGPVPKKATD VVQPGQQIWV RKVDDNWWLA 420
  421 QVPDVNSALV SIDPNNGAIK ALVGGFDFNQ SKFNRATQAL RQVGSNIKPF LYTAAMDKGL 480
  481 TLATILNDLP ITRWDSGAGT DWRPKNSPPT YDGPIRLRQG LGQSKNVVMV RAMRAMGVDY 540
  541 AAEYLQRFGF PAQNIVHSES LALGSASFTP LQLVRGYAVL ANGGYLVDPY FITKITDDVG 600
  601 NVLFETKPKV VCDNCNLPVI YGDTQRSVVL SDDNIENVAT SQNQNASNVP MPELEQVTPA 660
  661 QTTLNSEQQY APHVISTPLA FLMRDALNSN IFGEPGWMGT GWRAGRDLKR KDIGGKTGTT 720
  721 NSSKDAWFSG YGPDTVTSVW IGFDDHRRNL GRSTASGAIP DQISGAEGGA KTAQPAWNDF 780
  781 MKVALEGLPE KQVPPPPGIV SVVIDKQTGK LSNGGPGSRS EYFIDGTQPT EHTVHEVGTT 840
  841 LMDNGQTHEL F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..185] PSI-BLAST 94.69897 No description for 2oluA was found.
    2 View Details [186..756] PSI-BLAST 59.69897 Penicillin-binding protein 2x (pbp-2x), c-terminal domain; Penicillin-binding protein 2x (pbp-2x), N-terminal domain; Penicillin-binding protein 2x (pbp-2x), transpeptidase domain
    3 View Details [757..851] FFAS03 1.64 Active site restructuring regulates ligand recognition in classA Penicillin-binding proteins (PBPs)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • drug binding
    		•  3.43867028493374 bayes_pls_golite062009
  • serine-type D-Ala-D-Ala carboxypeptidase activity
    		•  3.12650314537616 bayes_pls_golite062009
  • penicillin binding
    		•  2.89507018520983 bayes_pls_golite062009
  • serine-type carboxypeptidase activity
    		•  2.70174066798582 bayes_pls_golite062009
  • serine-type exopeptidase activity
    		•  2.69091897402517 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
    		•  2.14702453234629 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  1.96547160092829 bayes_pls_golite062009
  • catalytic activity
    		•  1.85492008367309 bayes_pls_golite062009
  • exopeptidase activity
    		•  1.44522375970439 bayes_pls_golite062009
  • binding
    		•  1.11566650386305 bayes_pls_golite062009
  • peptidase activity
    		•  0.376767771035659 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.163657050466595 bayes_pls_golite062009
  • protein binding
    		•  0.0666688846338231 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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