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Protein Overview: gi|21957194, gi|...

General Information:
Name(s) found: gi|22124411 [NCBI NR]
gi|21957194 [NCBI NR]
Description(s) found:
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  • gi|22124411|ref|NP_667834.1| uroporphyrinogen decarboxylase [Yersinia pestis KIM] [NCBI NR]
  • gi|21957194|gb|AAM84085.1|AE013650_10 uroporphyrinogen decarboxylase [Yersinia pestis KIM] [NCBI NR]
  • uroporphyrinogen decarboxylase [Yersinia pestis CO92]gi|45442851|ref|NP_994390.1| uroporphyrinogen decarboxylase [Yersinia pestis biovar Medievalis str. 91001]gi|22124411|ref|NP_667834.1| uroporphyrinogen decarboxylase [Yersinia pestis KIM]gi|21957194| [nrdb_11152004_Chlamydomonas]
  • uroporphyrinogen decarboxylase [Yersinia pestis KIM] [nr-271106-contam.fasta]
    • Organism: Yersinia pestis KIM10+
    Length: 355 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELKNDRYL RALLRQPVDM TPVWMMRQAG RYLPEYKATR AIAGDFMSLC KNAELACEVT  60
   61 MQPLRRYPLD AAILFSDILT IPDAMGLGLY FETGEGPRFQ SPITCRADVE KLPIPDPEQE 120
  121 LGYVMNAVRT IRRELAGSVP LIGFSGSPWT LATYMVEGGS SKAFTKLKKM MYAEPQTLHL 180
  181 LLDKLADSVI LYLNAQIKAG AQSVMIFDTW GGVLTGRDYH EFSLNYMHKI VDGLIRENEG 240
  241 RRVPVTLFTK GGGPWLEAMA ATGCDALGLD WTTDIADARR RVGDKVALQG NMDPSVLYAP 300
  301 PARIEQEVST ILASFGQGEG HVFNLGHGIH QDVPPAHAGA FVNAVHALSR PYHQK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..355] PSI-BLAST 123.0 Uroporphyrinogen Decarboxylase in complex with coproporphyrinogen-I

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • uroporphyrinogen decarboxylase activity
    		•  4.48282084722609 bayes_pls_golite062009
  • catalytic activity
    		•  2.37862248560593 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  1.67493268854029 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  1.54242506764415 bayes_pls_golite062009
  • binding
    		•  1.19577203030346 bayes_pls_golite062009
  • transferase activity
    		•  1.11861612545715 bayes_pls_golite062009
  • protein binding
    		•  0.30230496242508 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle