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Protein Overview: gi|30040383, gi|...

General Information:
Name(s) found: gi|30062138 [NCBI NR]
gi|30040383 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|30062138|ref|NP_836309.1| replication initiation regulator SeqA [Shigella flexneri 2a str. 2457T] [NCBI NR]
  • gi|30040383|gb|AAP16115.1| negative modulator of initiation of replication [Shigella flexneri 2a str. 2457T] [NCBI NR]
    • Organism: Shigella flexneri 2a str. 2457T
    Length: 181 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTIEVDDEL YSYIASHTKH IGESASDILR RMLKFSAASQ PAAPVTKEVR VASPAIVEAK  60
   61 PVKTIKDKVR AMRELLLSDE YAEQKRAVNR FMLLLSTLYS LDAQAFAEAT ESLHGRTRVY 120
  121 FAADEQTLLK NGNQTKPKHV PGTPYWVITN TNTGRKCSMI EHIMQSMQFP AELIEKVCGT 180
  181 I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] PSI-BLAST 61.154902 Replication modulator SeqA, C-terminal DNA-binding domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA binding
    		•  1.66675027391619 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.53696912152919 bayes_pls_golite062009
  • binding
    		•  1.4518686482116 bayes_pls_golite062009
  • DNA replication origin binding
    		•  1.34568721590475 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.14998082978656 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle