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Protein Overview: gi|1361201, gi|5...

General Information:
Name(s) found: gi|537020 [NCBI NR]
gi|1361201 [NCBI NR]
Description(s) found:
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  • gi|537020|gb|AAA97075.1| vacB [Escherichia coli] [NCBI NR]
  • pir||S56404 virulence-associated protein vacB homolog - Escherichia coli (strain K-12) [NCBI NR]
  • RNase R; ribonuclease R [Escherichia coli K12]gi|1790622|gb|AAC77136.1| ribonuclease R; RNase R [Escherichia coli K12]gi|1361201|pir||S56404 virulence-associated protein vacB homolog - Escherichia coli (strain K-12)gi|537020|gb|AAA97075.1| vacB [Escher [nrdb_11152004_Chlamydomonas]
  • vacB [Escherichia coli] [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
    • Organism: Escherichia coli
    Length: 827 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKIFIRDDN GGTEMSQDPF QEREAEKYAN PIPSREFILE HLTKREKPAS RDELAVELHI  60
   61 EGEEQLEGLR RRLRAMERDG QLVFTRRQCY ALPERLDLVK GTVIGHRDGY GFLRVEGRKD 120
  121 DLYLSSEQMK TCIHGDQVLA QPLGADRKGR REARIVRVLV PKTSQIVGRY FTEAGVGFVV 180
  181 PDDSRLSFDI LIPPDQIMGA RMGFVVVVEL TQRPTRRTKA VGKIVEVLGD NMGTGMAVDI 240
  241 ALRTHEIPYI WPQAVEQQVA GLKEEVPEEA KAGRVDLRDL PLVTIDGEDA RDFDDAVYCE 300
  301 KKRGGGWRLW VAIADVSYYV RPSTPLDREA RNRGTSVYFP SQVIPMLPEV LSNGLCSLNP 360
  361 QVDRLCMVCE MTVSSKGRLT GYKFYEAVMS SHARLTYTKV WHILQGDQDL REQYAPLVKH 420
  421 LEELHNLYKV LDKAREERGG ISFESEEAKF IFNAERRIER IEQTQRNDAH KLIEECMILA 480
  481 NISAARFVEK AKEPALFRIH DKPSTEAITS FRSVLAELGL ELPGGNKPEP RDYAELLESV 540
  541 ADRPDAEMLQ TMLLRSMKQA IYDPENRGHF GLALQSYAHF TSPIRRYPDL TLHRAIKYLL 600
  601 AKEQGHQGNT TETGGYHYSM EEMLQLGQHC SMAERRADEA TRDVADWLKC DFMLDQVGNV 660
  661 FKGVISSVTG FGFFVRLDDL FIDGLVHVSS LDNDYYRFDQ VGQRLMGESS GQTYRLGDRV 720
  721 EVRVEAVNMD ERKIDFSLIS SERAPRNVGK TAREKAKKGD AGKKGGKRRQ VGKKVNFEPD 780
  781 SAFRGEKKTK PKAAKKDARK AKKPSAKTQK IAAATKAKRA AKKKVAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..748] PSI-BLAST 137.0 No description for 2id0A was found.
    2 View Details [749..827] PSI-BLAST 24.522879 No description for 2oceA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.50222432647158 bayes_pls_golite062009
  • binding
    		•  2.45645422079711 bayes_pls_golite062009
  • ribonuclease activity
    		•  2.29464134578835 bayes_pls_golite062009
  • DNA binding
    		•  2.01509187496805 bayes_pls_golite062009
  • RNA binding
    		•  0.764074810825563 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.645338044440112 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.645324285187609 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.645324285187609 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.625278911312822 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.593594938681299 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.579049615800331 bayes_pls_golite062009
  • hydrolase activity
    		•  0.184672913742179 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.00505175337890207 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle