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Protein Overview: gi|279925

General Information:
Name(s) found: gi|279925 [NCBI NR]
Description(s) found:
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  • pir||G44001 vpu protein - human immunodeficiency virus type 1 (strain YU-2) [NCBI NR]
  • VPU protein (U ORF protein)gi|279925|pir||G44001 vpu protein - human immunodeficiency virus type 1 (strain YU-2) [nrdb_11152004_Chlamydomonas]
    • Organism: Human immunodeficiency virus 1
    Length: 81 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum membrane [UNKNOWNLink to PubMed article]
    cytosol [UNKNOWNLink to PubMed articleLink to PubMed articleLink to PubMed article][TAS]
    nucleoplasm [TAS]
    Biological Process: uncoating of virus [TAS]
    entry into host cell [TAS]
    viral reproduction [TAS]
    provirus integration [UNKNOWNLink to PubMed article][TAS]
    RNA-dependent DNA replication [TAS]
    initiation of viral infection [UNKNOWNLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQSLQVLAIV ALVVATIIAI VVWTIVFIEY RKILRQRKID RLINRITERA EDSGNESDGD  60
   61 QEELSALVER GHLAPWDVDD L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..81] Pfam 46.552842 No description for PF00558.10 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle