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Protein Overview: TPP1

General Information:
Name(s) found: TPP1 / YMR156C [SGD]
Description(s) found:
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  • gi|825561|emb|CAA89792.1| unknown [Saccharomyces cerevisiae] [NCBI NR]
  • gi|6323806|ref|NP_013877.1| DNA 3'-phosphatase that functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; has similarity to the l-2-haloacid dehalogenase superfamily; Tpp1p [Sa [NCBI NR]
  • gi|45269850|gb|AAS56305.1| YMR156C [Saccharomyces cerevisiae] [NCBI NR]
  • gi|2497164|sp|Q03796.1|TPP1_YEAST RecName: Full=Polynucleotide 3'-phosphatase; AltName: Full=2'(3')-polynucleotidase; AltName: Full=DNA 3'-phosphatase; AltName: Full=Three prime phosphatase [NCBI NR]
  • pir||S54514 hypothetical protein YMR156c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • Polynucleotide 3'-phosphatase OS=Saccharomyces cerevisiae GN=TPP1 PE=2 SV=1 [Swiss-Prot]
  • TPP1 DNA 3`-phosphatase that functions in the repair of endogenous DNA damage [mips]
  • DNA 3'-phosphatase that functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; has similarity to the l-2-haloacid dehalogenase superfamily [SGD]
  • TPP1, Chr XIII from 570299-571015, reverse complement [yeast_orfs2]
  • Chr XIII from 570299-571015, reverse complement [yeastorf3.fasta]
  • Chr XIII from 571015-570299, reverse complement [yeastorf5.fasta]
  • (Q03796) Hypothetical 27.4 kDa protein in IMP1-HLJ1 intergenic region [4932.FASTACCERV.txt]
  • TPP1 SGDID:S0004765, Chr XIII from 571015-570299, reverse complement, Verified ORF [yeastflysequest.fasta]
  • DNA 3'-phosphatase that functions in the repair of endogenous DNA damage; functionally redundant with Apn1p and Apn2p [Saccharomyces cerevisiae]gi|825561|emb|CAA89792.1| unknown [Saccharomyces cerevisiae]gi|45269850|gb|AAS56305.1| YMR156C [Saccharomyces [nrdb_11152004_Chlamydomonas]
  • (Q03796) Polynucleotide 3'-phosphatase (EC 3.1.3.32) (2'(3')-polynucleotidase) (DNA 3' phosphatase) (Three prime phosphatase) [cerv4932.FASTAC]
  • TPP1 SGDID:S000004765, Chr XIII from 571015-570299, reverse complement, Verified ORF, "DNA 3'-phosphatase that functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; has similar [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • unknown [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • YMR156C [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • DNA 3'-phosphatase that functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; has similarity to the l-2-haloacid dehalogenase superfamily; Tpp1p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Polynucleotide 3'-phosphatase (2'(3')-polynucleotidase) (DNA 3' phosphatase) (Three prime phosphatase) [nr-271106-contam.fasta]
  • TPP1 SGDID:S000004765, Chr XIII from 571015-570299, reverse complement, Verified ORF, "DNA 3'-phosphatase that functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; has similarity to the l-2-haloacid dehalogenase superfamily" [yeast-bovrabprots.fasta]
  • [chemostatdb.fasta]
  • Polynucleotide 3'-phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPP1 PE=2 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • TPP1 SGDID:S000004765, Chr XIII from 571016-570300, Genome Release 64-1-1, reverse complement, Verified ORF, "DNA 3'-phosphatase that functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; has similarity to the l-2-haloacid dehalogenase superfamily" [yeast-030211-contam.fasta]
  • Polynucleotide 3'-phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPP1 PE=3 SV=1 [YEAST.fasta.20131015]
  • TPP1 SGDID:S000004765, Chr XIII from 571016-570300, Genome Release 64-2-1, reverse complement, Verified ORF, "DNA 3'-phosphatase; functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; similar to the l-2-haloacid dehalogenase superfamily; homolog of human polynucleotide kinase/3′-phosphatase" [20141208_orf_trans.fasta]
  • TR1573|c0_g1_i1|g.1179 ORF TR1573|c0_g1_i1|g.1179 TR1573|c0_g1_i1|m.1179 type:complete len:239 (+) TR1573|c0_g1_i1:191-907(+) [Y12_S_cerevisiae-Sep2015-contam.fasta]
  • YMR156C SGDID:S000004765, Chr XIII from 571016-570300, Genome Release 64-1-1, reverse complement, Verified ORF, "DNA 3'-phosphatase that functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; has similarity to the l-2-haloacid dehalogenase superfamily" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
  • asmbl_3952|g.2897 ORF asmbl_3952|g.2897 asmbl_3952|m.2897 type:complete len:239 (+) asmbl_3952:54-770(+) [Y12_Trinity_v2_2_0_PASA_6May2016-contam.fasta]
  • ID=asmbl_3956|g.2456 ORF ID=asmbl_3956|g.2456 ID=asmbl_3956|m.2456 type:complete len:239 (+) ID=asmbl_3956:54-770(+) [Y12_quiver_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 238 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: DNA repair [IDALink to PubMed article][IMPLink to PubMed article]
    Molecular Function: polynucleotide 3'-phosphatase activity [IDALink to PubMed article][TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHKLTILPF LIKFTPKFPQ SIDHDEHGLN VYAFDLDHTI IKPKSPNISF SRSASDWQFI  60
   61 NFNSKKSTLD YLCNIIDNDP TAVIVIFSNQ GGVITVPRTS KSCTKYTNKI LLFLKAIKND 120
  121 ERGETLSHRL WLYAAPKRPK TFAANHSKIT FASLGESYNN DPNIFEKVRK PMTGMVEFFK 180
  181 RDLESAYRVS EQISPIKLNW IYYCGDAAGR KKDFSDSDIK FAENLHVEFK YPEEIFHG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen TPP1 ENP1 2 Unpublished Fields Lab Data

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..238] MSA 1.013974 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle