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Protein Overview: stumps-PC

General Information:
Name(s) found: stumps-PC / FBpp0111806 [FlyBase]
Description(s) found:
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  • gi|90855597|gb|ABE01160.1| RE42507p [Drosophila melanogaster] [NCBI NR]
  • gi|161078295|ref|NP_001097792.1| stumps, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|158030260|gb|ABW08674.1| stumps, isoform C [Drosophila melanogaster] [NCBI NR]
  • The gene stumps is referred to in FlyBase by the symbol Dmel\stumps (CG31317, FBgn0020299). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:10402941..10433804. It has the cytological map location 88C6-88C9. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: tracheal outgrowth, open tracheal system; oogenesis; open tracheal system development; mesoderm development. 27 alleles are reported. The phenotypes of these alleles are annotated with 19 unique terms, many of which group under: organ system; primordium; anatomical structure; portion of tissue; nervous system; germ layer; embryonic nervous system; tracheal system; embryonic/larval tracheal system; embryonic/larval dorsal branch; embryonic pericardial cell; midgut constriction; egg; circulatory system; multi-cell-component structure. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • type=protein; loc=3R:join(10408959..10408968,10418004..10418242,10418383..10418564,10418726..10418937,10430140..10430326,10430415..10433220); ID=FBpp0111806; name=stumps-PC; parent=FBgn0020299,FBtr0112893; dbxref=FlyBase:FBpp0111806,FlyBase_Annotation_IDs [fly-100309-contam.fasta]
  • RE42507p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(10408959..10408968,10418004..10418242,10418383..10418564,10418726..10418937,10430140..10430326,10430415..10433220); ID=FBpp0111806; name=stumps-PC; parent=FBgn0020299,FBtr0112893; dbxref=FlyBase:FBpp0111806,FlyBase_Annotation_IDs:CG31317-PC,REFSEQ:NP_001097792,GB_protein:ABW08674; MD5=bc9eeda2da604b9571b789722afd2db5; length=1211; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(10408959..10408968,10418004..10418242,10418383..10418564,10418726..10418937,10430140..10430326,10430415..10433220); ID=FBpp0111806; name=stumps-PC; parent=FBgn0020299,FBtr0112893; dbxref=FlyBase:FBpp0111806,FlyBase_Annotation_IDs:CG31317-PC,REFSEQ:NP_001097792,GB_protein:ABW08674; MD5=bc9eeda2da604b9571b789722afd2db5; length=1211; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • RE42507p OS=Drosophila melanogaster GN=stumps PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:join(10408959..10408968,10418004..10418242,10418383..10418564,10418726..10418937,10430140..10430326,10430415..10433220); ID=FBpp0111806; name=stumps-PC; parent=FBgn0020299,FBtr0112893; dbxref=FlyBase:FBpp0111806,FlyBase_Annotation_IDs:CG31317-PC,REFSEQ:NP_001097792,GB_protein:ABW08674,FlyMine:FBpp0111806,modMine:FBpp0111806; MD5=bc9eeda2da604b9571b789722afd2db5; length=1211; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(14583237..14583246,14592282..14592520,14592661..14592842,14593004..14593215,14604418..14604604,14604693..14607498); ID=FBpp0111806; name=stumps-PC; parent=FBgn0020299,FBtr0112893; dbxref=FlyBase:FBpp0111806,FlyBase_Annotation_IDs:CG31317-PC,REFSEQ:NP_001097792,GB_protein:ABW08674,FlyMine:FBpp0111806,modMine:FBpp0111806; MD5=bc9eeda2da604b9571b789722afd2db5; length=1211; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(14583237..14583246,14592282..14592520,14592661..14592842,14593004..14593215,14604418..14604604,14604693..14607498); ID=FBpp0111806; name=stumps-PC; parent=FBgn0020299,FBtr0112893; dbxref=FlyBase:FBpp0111806,FlyBase_Annotation_IDs:CG31317-PC,REFSEQ:NP_001097792,GB_protein:ABW08674,FlyMine:FBpp0111806,modMine:FBpp0111806; MD5=bc9eeda2da604b9571b789722afd2db5; length=1211; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q9VFI0, RE42507p OS=Drosophila melanogaster GN=stumps PE=2 SV=1 [DROME.fasta.20160308]
  • FBpp0111806 type=protein; loc=3R:join(14583237..14583246,14592282..14592520,14592661..14592842,14593004..14593215,14604418..14604604,14604693..14607498); ID=FBpp0111806; name=stumps-PC; parent=FBgn0020299,FBtr0112893; dbxref=FlyBase:FBpp0111806,FlyBase_Annotation_IDs:CG31317-PC,REFSEQ:NP_001097792,GB_protein:ABW08674,FlyMine:FBpp0111806,modMine:FBpp0111806; MD5=bc9eeda2da604b9571b789722afd2db5; length=1211; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(14583237..14583246,14592282..14592520,14592661..14592842,14593004..14593215,14604418..14604604,14604693..14607498); ID=FBpp0111806; name=stumps-PC; parent=FBgn0020299,FBtr0112893; dbxref=FlyBase:FBpp0111806,FlyBase_Annotation_IDs:CG31317-PC,REFSEQ:NP_001097792,GB_protein:ABW08674,UniProt/TrEMBL:Q1WWH6,FlyMine:FBpp0111806,modMine:FBpp0111806; MD5=bc9eeda2da604b9571b789722afd2db5; length=1211; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1211 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [NAS][TAS]
    intracellular [TAS]
    Biological Process: morphogenesis of a branching structure [NAS]
    heart development [NAS]
    epithelial cell migration, open tracheal system [TAS]
    primary branching, open tracheal system [TAS]
    mesodermal cell migration [TAS]
    oogenesis [IMP]
    mesoderm migration [NAS]
    mesoderm development [IEP]
    fibroblast growth factor receptor signaling pathway [NAS][TAS]
    tracheal outgrowth, open tracheal system [IMP]
    gastrulation [NAS]
    open tracheal system development [IMP][NAS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVDNPYYFC NETKSPRTPD SQSSSRGFSI FKRRNSKGSS PRPLVMTNPE QMRLITSANL  60
   61 DTTATMALGS PRGSFNSLAG YPQHAIELQT MNMYRQRSAN SHSEFRERLN SCNETHSSQC 120
  121 PGGGGASVAG DHDEVFNPLT SPTSSKSHRH HTLPSGGTRR HSLGNWAQHQ HQQQHQQNSG 180
  181 AMGLGSPDEV PSMMAPRPPL LSPNKFRGSS HRRRDNCGNV NNTSGSSASG FLGSPGYNMD 240
  241 DILIITAKHS ERAYLRATFL KNHFDKITKQ RGRKPFNFLH IKIDDGPFSE EIAHKYQNTA 300
  301 LQIVILCPAL LALPHSFLMT QLSAIIRVEK VLAILLDVSE EKVKEMHKSA LPSYYKWRRC 360
  361 VVRDNDQVQI SNILGIATDI LGRALCQRPP CQDSSGGGGG GLSRSFSSCT EGFTVLPKKV 420
  421 KLGQNKVVAL LAEPLEKNDT LKLQVEKSGE LIELRNFKCR NPYTLQFNIP EACMEISTMI 480
  481 EIRIEKNNKS LGARPIKCES RLRELEQLLR IEDSPIEFMC HALGIGPVER DALDQHLLQC 540
  541 FQRNMPPNFH LLSGPSERQP HFFTRLESSP EEYPTLLHFA ARWGLNRLCI QLMECPGGDT 600
  601 ACGVRNCAGR TPAELAEQEG HHKLAQNIVS FAEFHELTTM YHYFKGVTPP GESCPKPSAN 660
  661 VVIEAHPVKA GKTNKPPKEL PTAEYMEMSS GSERENTPEV RTKTETLAIS NLNYISVETE 720
  721 DENLQASVAE KKVESEKKLP EAGNQPGPEK TTNELRINEP PYYQSKEQNQ QPKELKNQSK 780
  781 SLDEVDAAPL YQTDKFSQEC SQLLENQLGN DYVLQPSNVP VAQDDGNYLF QPSNRPVEEP 840
  841 LRLNRCTNRQ PGYGTLKRSA SDASAASHTR SNADDELAEI MHDFKNNVLS IRDVEVLVER 900
  901 WKHRNDVQQS FREKQDQIDQ LRREYERIQE QVKSHLKRET PFERIKKFFL RSKTPGGNDS 960
  961 LLDETKSSIA TSCSFKSAGG VSSSAGAGRP ISSLSLQSVS SSSSSSGRLS TGSNCSGASL1020
 1021 GDSGTHSDHE DRRFPHCRMM DNYMVPPTPR PVFTPSSTPG DERHQIVFPS PMSSCQRLNT1080
 1081 PTSPTGSEHY QMFPSNIPVY GSQPLVGSQS SNYLNTIMEA KEQAETQHYQ NQNGVTLQPI1140
 1141 KLNERSNIIY GKLTKSSSAS GCSSFKPKQI PVPCPQVGSI EVQAEVYQNV GDVAPEKDSK1200
 1201 AEEETPNYMN C

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle