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Protein Overview: gi|157817953, gi...

General Information:
Name(s) found: gi|157817953 [NCBI NR]
gi|149032682 [NCBI NR]
gi|109508494 [NCBI NR]
gi|109507800 [NCBI NR]
Description(s) found:
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  • gi|157817953|ref|NP_001100884.1| Rpgrip1-like [Rattus norvegicus] [NCBI NR]
  • gi|149032682|gb|EDL87552.1| similar to Fantom protein (predicted) [Rattus norvegicus] [NCBI NR]
  • gi|109508494|ref|XP_001065429.1| PREDICTED: similar to retinitis pigmentosa GTPase regulator interacting protein 1 [Rattus norvegicus] [NCBI NR]
  • gi|109507800|ref|XP_226323.4| PREDICTED: similar to retinitis pigmentosa GTPase regulator interacting protein 1 [Rattus norvegicus] [NCBI NR]
  • Rpgrip1-like [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • similar to Fantom protein (predicted) [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • PREDICTED: similar to retinitis pigmentosa GTPase regulator interacting protein 1 [Rattus norvegicus] [nr-271106-contam.fasta]
  • Tax_Id=10116 Gene_Symbol=Rpgrip1l Rpgrip1-like [rat-ipi-250309-contam.fasta]
  • Similar to Fantom protein (Predicted) OS=Rattus norvegicus GN=Rpgrip1l [011711_HMR.fasta]
  • Similar to Fantom protein (Predicted) OS=Rattus norvegicus GN=Rpgrip1l PE=4 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta]
  • Protein Rpgrip1l OS=Rattus norvegicus GN=Rpgrip1l PE=4 SV=1 [Aridor_1205.fasta]
    • Organism: Rattus norvegicus
    Length: 1264 amino acids

    Gene Ontology:
    Cellular Component: microtubule basal body [UNKNOWN]
    centrosome [UNKNOWN]
    cytoplasm [UNKNOWN]
    cilium axoneme [UNKNOWN]
    cilium [UNKNOWN]
    Biological Process: specification of segmental identity, mandibular segment [UNKNOWN]
    telencephalon development [UNKNOWN]
    cerebellum development [UNKNOWN]
    specification of segmental identity, maxillary segment [UNKNOWN]
    nose development [UNKNOWN]
    brain development [UNKNOWN]
    olfactory bulb development [UNKNOWN]
    determination of left/right symmetry [UNKNOWN]
    negative regulation of G-protein coupled receptor protein signaling pathway [UNKNOWN]
    pericardium development [UNKNOWN]
    regulation of smoothened signaling pathway [UNKNOWN]
    neural tube patterning [UNKNOWN]
    corpus callosum development [UNKNOWN]
    lateral ventricle development [UNKNOWN]
    in utero embryonic development [UNKNOWN]
    kidney development [UNKNOWN]
    liver development [UNKNOWN]
    cilium assembly [UNKNOWN]
    camera-type eye development [UNKNOWN]
    limb morphogenesis [UNKNOWN]
    embryonic forelimb morphogenesis [UNKNOWN]
    embryonic hindlimb morphogenesis [UNKNOWN]
    Molecular Function: thromboxane A2 receptor binding [UNKNOWN]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGPSDETAG DLPVKDTGLH LFGIGGLQET STARTVKARQ AVSRVSREEL EDRFLRLHDE  60
   61 NILLKQHARK QEDKIKRMAT KLIRLVNDKK RYERVGGGPK RLGRDVEMEE MIEQLQEKVH 120
  121 ELERQNEVLK NRLISAKQQL QVQGHRQTSY SRVQARTNTG RRKASTTAGL QECLGKGIKV 180
  181 QNVDEAETVQ PTLTKYSSGL LEEARGEIRN LENVIQSQRG QIEELEHLAE ILKTQLKRKE 240
  241 NEIELSLLQL REQQATDQRS NIRDNVEMIK LHKQLVEKSN ALSVIEGKFI QLQEKQRTLR 300
  301 ISHDALMANG DELNMQLKEQ RLKCCSLEKQ LHSVRFSERR VEELQDRIND LEKERELLKE 360
  361 NYDKLYNSAF SAAHEEQWKL KEQQMKVQIA QLETALKSDL TDKAEVLDQL KTERDQNEKL 420
  421 VQENRDLQLQ CLQQKQQLHE LQNRMKFFNQ ESDINVDDLS EALLLIKAQK EQKNGDLSFL 480
  481 EKVDSKINKD LDRSMKELQA THAETVQELE KTRNMLIMQH KINKDYQMEV ETVTQKMENL 540
  541 QQDHELKVEQ YVHLLDVRAA RIQKLEAQLK DIAYGTKQYK FKPEIMPDDS VDEFDETIHL 600
  601 ERGENLFEIH INKVAFASDV LRASGDKELL TFCTYAFYDF ELQTTPIVRG PCPEYNFTSQ 660
  661 YLVHVNDLFL QYIQKNTVTL ELHQAYSTDY ETVAACQLRF HEILEKSGRI FCTTSLVGTK 720
  721 GDIPNFGTVE YWFRLRVPMD QAIRLYRERA KALGYITSNF KKPEKMQLLS QQAATTAQIS 780
  781 SPESTDGNLN ELHITVRCCT NLQSRARHLQ PHAYVVYKFF DFPDHDTAII PSSNDPQFDD 840
  841 YMCFPVPMNM DLDRYLKSES LSFYVFDDSD IQENIYIGKV NVPLISLAHD RCISGIFELM 900
  901 DKDKHAAGTI QVILKWKFTY LPPSGSIPTE DLGRFVGREE PEAIQRRPPT SSGTEAVVTP 960
  961 KPKPRQRLTF VDKKVSFVDT MPHPSPEASP PPKDIKHNSP EVGPETENSM PAVACPSKES1020
 1021 SVAKVEENMG KTQQGKEDDI SFLSEGQLAS QSVASSEDET EITEELEPED EDRSASDSDD1080
 1081 CIIPSSVSTD TKKPSEEIRI EIIALSLNDS QITREDTVQR LFIECRFYSL PAEETPMSLP1140
 1141 KPKSGQWVYY NYTHVLYLDK ENNPAVRDVL KAVLQRRELP HRSVRFTVVS DPPEDEQDLE1200
 1201 CEDIGVAHLD LVDVFQKGRD IIEQDIDVLD ARTDGGSIGK LKVTVEALHA LRSVYEQYRK1260
 1261 DLEA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle