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Protein Overview: gi|110806518, gi...

General Information:
Name(s) found: gi|110806518 [NCBI NR]
gi|110616066 [NCBI NR]
Description(s) found:
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  • gi|110806518|ref|YP_690038.1| RNA polymerase sigma factor RpoE [Shigella flexneri 5 str. 8401] [NCBI NR]
  • gi|110616066|gb|ABF04733.1| RNA polymerase sigma-70 factor [Shigella flexneri 5 str. 8401] [NCBI NR]
  • RNA polymerase sigma-70 factor [Shigella flexneri 5 str. 8401] [nr-271106-contam.fasta]
    • Organism: Shigella flexneri 5 str. 8401
    Length: 191 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQLTDQVL VERVQKGDQK AFNLLVVRYQ HKVASLVSRY VPSGDVPDVV QEAFIKAYRA  60
   61 LDSFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDVDA IEAENFESGG ALKEISNPEN 120
  121 LMLSEELRQI VFRTIESLPE DLRMAITLRE LDGLSYEEIA AIMDCPVGTV RSRIFRAREA 180
  181 IDNKVQPLIR R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..191] PSI-BLAST 45.522879 SigmaE factor (RpoE)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription initiation factor activity
    		•  5.78609205758337 bayes_pls_golite062009
  • sigma factor activity
    		•  5.64833683794078 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.74356768143558 bayes_pls_golite062009
  • binding
    		•  1.07192234179226 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle