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Protein Overview: gi|89105349, gi|...

General Information:
Name(s) found: gi|89105349 [NCBI NR]
gi|165939529 [NCBI NR]
gi|165912578 [NCBI NR]
Description(s) found:
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  • gi|89105349|ref|ZP_01177870.1| COG0726: Predicted xylanase/chitin deacetylase [Yersinia pestis biovar Orientalis str. IP275] [NCBI NR]
  • gi|165939529|ref|ZP_02228075.1| Polysaccharide deacetylase [Yersinia pestis biovar Orientalis str. IP275] [NCBI NR]
  • gi|165912578|gb|EDR31209.1| Polysaccharide deacetylase [Yersinia pestis biovar Orientalis str. IP275] [NCBI NR]
  • COG0726: Predicted xylanase/chitin deacetylase [Yersinia pestis biovar Orientalis str. IP275] [nr-271106-contam.fasta]
    • Organism: Yersinia pestis biovar Orientalis str. IP275
    Length: 301 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQVGLRIDV DTYRGTQYGV PSLLTVLEKH DIRASFFFSV GPDNMGRHLW RLFRPRFLWK  60
   61 MLRSNAASLY GWDILLAGTA WPGKKIAKDF GPLMKAAAMA GHEVGLHAWD HQGWQANVAS 120
  121 WSQQQLTEQV QRGVDTLQQS IGQPISCSAA AGWRADERVL AVKQQFDFSY NSDCRGTHPF 180
  181 RPLLPNGSLG SVQIPVTLPT YDEVVGGEVQ AENFNDFIID AILRDSGVSV YTIHAEVEGM 240
  241 SQAAMFEQLL MRAKQQDIEF CPLSKLLPSD LQLLPVGKVI RAAFPGREGW LGCQSDIKDA 300
  301 E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..301] PSI-BLAST 39.0 Structure of Streptococcus pneumoniae peptidoglycan deacetylase ( SpPgdA)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.54926008475976 bayes_pls_golite062009
  • deacetylase activity
    		•  1.07373873416936 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  1.04159714419468 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  0.78725677170464 bayes_pls_golite062009
  • hydrolase activity
    		•  0.7139390771237 bayes_pls_golite062009
  • mannosidase activity
    		•  0.32530435999467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle