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Protein Overview: gi|109467443, gi...

General Information:
Name(s) found: gi|223718723 [NCBI NR]
gi|109467443 [NCBI NR]
gi|109465447 [NCBI NR]
gi|109458527 [NCBI NR]
Description(s) found:
Found 15 descriptions.
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  • gi|223718723|ref|NP_001138745.1| cytochrome c oxidase, subunit VIb polypeptide 1 [Rattus norvegicus] [NCBI NR]
  • gi|109467443|ref|XP_001071713.1| PREDICTED: similar to cytochrome c oxidase, subunit VIb polypeptide 1 [Rattus norvegicus] [NCBI NR]
  • gi|109465447|ref|XP_578078.2| PREDICTED: similar to cytochrome c oxidase, subunit VIb polypeptide 1 [Rattus norvegicus] [NCBI NR]
  • gi|109458527|ref|XP_001068644.1| PREDICTED: similar to cytochrome c oxidase, subunit VIb polypeptide 1 [Rattus norvegicus] [NCBI NR]
    • Organism: Rattus norvegicus
    Length: 86 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [UNKNOWN][IEA]
    mitochondrial inner membrane [UNKNOWN]
    Biological Process: NONE FOUND
    Molecular Function: cytochrome-c oxidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDIKTKIK NYKTAPFDSR FPNQNQTKNC WQNYLDFHRC EKAMTAKGGD VSVCEWYRRV  60
   61 YKSLCPVSWV SAWDDRIAEG TFPGKI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..86] PSI-BLAST 37.0 Cytochrome c oxidase subunit h

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cytochrome-c oxidase activity
    		•  8.77230386960109 bayes_pls_golite062009
  • oxidoreductase activity, acting on heme group of donors
    		•  8.77230386960109 bayes_pls_golite062009
  • oxidoreductase activity, acting on heme group of donors, oxygen as acceptor
    		•  8.77230386960109 bayes_pls_golite062009
  • heme-copper terminal oxidase activity
    		•  8.46183559370125 bayes_pls_golite062009
  • oxidoreductase activity
    		•  5.63278726556437 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  3.24364609265355 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  3.09509456823261 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  2.46771419705328 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  2.2783820574886 bayes_pls_golite062009
  • catalytic activity
    		•  0.287695754348243 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle