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Protein Overview: gi|117558400, gi...

General Information:
Name(s) found: gi|74192322 [NCBI NR]
gi|74152720 [NCBI NR]
gi|74152521 [NCBI NR]
gi|74152435 [NCBI NR]
gi|25527322 [NCBI NR]
gi|18253081 [NCBI NR]
gi|148673361 [NCBI NR]
gi|14582376 [NCBI NR]
gi|13560694 [NCBI NR]
gi|12963823 [NCBI NR]
gi|12845591 [NCBI NR]
gi|117558400 [NCBI NR]
gi|117558394 [NCBI NR]
gi|11526800 [NCBI NR]
Description(s) found:
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  • gi|74192322|dbj|BAE34343.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|74152720|dbj|BAE42631.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|74152521|dbj|BAE33977.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|74152435|dbj|BAE33955.1| unnamed protein product [Mus musculus] [NCBI NR]
  • pir||JC7800 neutrophil activating peptide-2 precursor - mouse [NCBI NR]
  • gi|18253081|dbj|BAB83941.1| chemokine subfamily B Cys-X-Cys [Mus musculus] [NCBI NR]
  • gi|148673361|gb|EDL05308.1| chemokine (C-X-C motif) ligand 7, isoform CRA_b [Mus musculus] [NCBI NR]
  • gi|14582376|gb|AAK69476.1|AF278700_1 thymus chemokine 1 [Mus musculus] [NCBI NR]
  • gi|13560694|gb|AAK30162.1|AF349465_2 platelet basic protein [Mus musculus] [NCBI NR]
  • gi|12963823|ref|NP_076274.1| pro-platelet basic protein [Mus musculus] [NCBI NR]
  • gi|12845591|dbj|BAB26811.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|117558400|gb|AAI27044.1| Pro-platelet basic protein [Mus musculus] [NCBI NR]
  • gi|117558394|gb|AAI27045.1| Pro-platelet basic protein [Mus musculus] [NCBI NR]
  • gi|11526800|gb|AAG36786.1|AF219112_1 thymus chemokine 1 [Mus musculus] [NCBI NR]
  • Ensembl_locations(Chr-bp):5-90070364 Thymus chemokine 1 [hmr_yeast5_DM3-1_pombe.fasta]
  • pro-platelet basic protein [HMR_022704-rand.fasta]
  • Thymus chemokine 1 [ipi.MOUSE.v3.06.fasta]
  • pro-platelet basic protein [Mus musculus]gi|13560694|gb|AAK30162.1| platelet basic protein [Mus musculus]gi|14582376|gb|AAK69476.1| thymus chemokine 1 [Mus musculus]gi|25527322|pir||JC7800 neutrophil activating peptide-2 precursor - mousegi|11526800|g [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10090 Thymus chemokine 1 [EBI-IPI_mouse_3.17_05-10-2006_con_reversed.fasta]
  • (NM_023785) pro-platelet basic protein [Mus musculus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • pro-platelet basic protein [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • chemokine (C-X-C motif) ligand 7, isoform CRA_b [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Pro-platelet basic protein [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • unnamed protein product [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • chemokine subfamily B Cys-X-Cys [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • platelet basic protein [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • thymus chemokine 1 [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10090 THYMUS CHEMOKINE 1 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Ppbp Platelet basic protein [mouse-ipi-250309-contam.fasta]
  • Tax_Id=10090 Gene_Symbol=Ppbp Thymus chemokine 1 [ipi.MOUSE_jw_12may08.contam.fasta]
  • Chemokine (C-X-C motif) ligand 7 [Mus musculus] [nr-271106-contam.fasta]
  • Tax_Id=10090 Gene_Symbol=Ppbp Thymus chemokine 1 ENSMUSG00000029372 IPI00111210 [IPIxENS.MOUSE_plus_REVERSE.fasta]
  • IPI:IPI00111210.1|TREMBL:Q9EQI5|ENSEMBL:ENSMUSP00000031319|REFSEQ:NP_076274 Tax_Id=10090 Gene_Symbol=Ppbp Platelet basic protein [ipi.MOUSE.fasta.20090209]
  • Chemokine (C-X-C motif) ligand 7, isoform CRA_b OS=Mus musculus GN=Ppbp [011711_HMR.fasta]
  • Tax_Id=10090 Gene_Symbol=Ppbp Uncharacterized protein [EBI_IPI_mouse_V3_87_09-27-2011_reversed.fasta]
  • Chemokine (C-X-C motif) ligand 7, isoform CRA_b OS=Mus musculus GN=Ppbp PE=2 SV=1 [uniprot-mouse-120502.fasta]
  • tr|Q9EQI5|Q9EQI5_MOUSE Chemokine (C-X-C motif) ligand 7, isoform CRA_b OS=Mus musculus GN=Ppbp PE=2 SV=1 [uniprot.sptr.mouse.20130102]
  • Chemokine (C-X-C motif) ligand 7, isoform CRA_b OS=Mus musculus GN=Ppbp PE=4 SV=1 [mouse-uniprot-290313-contam.fasta]
  • Chemokine (C-X-C motif) ligand 7, isoform CRA_b OS=Mus musculus GN=Ppbp PE=3 SV=1 [140319-MOUSE.fasta]
  • Chemokine (C-X-C motif) ligand 7, isoform CRA_b OS=Mus musculus GN=Ppbp PE=1 SV=1 [MOUSE.fasta.20160308]
    • Organism: Mus musculus
    Length: 113 amino acids

    Gene Ontology:
    Cellular Component: extracellular space [IEA]
    cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: cytokine activity [IEA]
    molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFRLRPTSS CTRACPLHNL QILLLLGLIL VALAPLTAGK SDGMDPYIEL RCRCTNTISG  60
   61 IPFNSISLVN VYRPGVHCAD VEVIATLKNG QKTCLDPNAP GVKRIVMKIL EGY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..113] PSI-BLAST 17.69897 CRYSTAL STRUCTURE OF CONNECTIVE TISSUE ACTIVATING PEPTIDE-III(CTAP-III) COMPLEXED WITH POLYVINYLSULFONIC ACID

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cytokine activity
    		•  6.1708940727626 bayes_pls_golite062009
  • chemokine activity
    		•  5.67919187038354 bayes_pls_golite062009
  • chemokine receptor binding
    		•  5.67919187038354 bayes_pls_golite062009
  • G-protein-coupled receptor binding
    		•  5.09316689640201 bayes_pls_golite062009
  • receptor binding
    		•  4.67023221989798 bayes_pls_golite062009
  • binding
    		•  3.45540733527166 bayes_pls_golite062009
  • protein binding
    		•  2.81150143929714 bayes_pls_golite062009
  • heparin binding
    		•  2.23982120855947 bayes_pls_golite062009
  • glycosaminoglycan binding
    		•  2.19415891666562 bayes_pls_golite062009
  • polysaccharide binding
    		•  1.92375408459941 bayes_pls_golite062009
  • chemoattractant activity
    		•  1.55605854765985 bayes_pls_golite062009
  • pattern binding
    		•  1.02739535268516 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.49941396747283 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle