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Protein Overview: gi|153222434, gi...

General Information:
Name(s) found: gi|153222434 [NCBI NR]
gi|124118871 [NCBI NR]
Description(s) found:
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  • gi|153222434|ref|ZP_01953168.1| RNA polymerase sigma-E factor [Vibrio cholerae MAK 757] [NCBI NR]
  • gi|124118871|gb|EAY37614.1| RNA polymerase sigma-E factor [Vibrio cholerae MAK 757] [NCBI NR]
    • Organism: Vibrio cholerae MAK 757
    Length: 190 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEQLTDQVL IERVQNGDKQ AFNLLVLRYQ NKVCNLISRY VSNSGDVADV AQEAFIKAYR  60
   61 AIPTFRGESA FYTWLYRIAV NTAKNHIVAQ SRRPPASDVD AEEAEFYEGG DALKELSNPE 120
  121 NITLSKELKK TVFDAIDALP DDLKTAMTLR ELDGLSYEEI AEVMDCPVGT VRSRIFRARE 180
  181 AVEKKIKPLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] PSI-BLAST 36.221849 SigmaE factor (RpoE)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription initiation factor activity
    		•  5.71806750193815 bayes_pls_golite062009
  • sigma factor activity
    		•  5.58029806879061 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.67872017549582 bayes_pls_golite062009
  • binding
    		•  1.02634976114785 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle