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Protein Overview: gi|125553558

General Information:
Name(s) found: gi|125553558 [NCBI NR]
Description(s) found:
  • gi|125553558|gb|EAY99267.1| hypothetical protein OsI_21231 [Oryza sativa Indica Group] [NCBI NR]
    • Organism: Oryza sativa Indica Group
    Length: 766 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVSDIGLS AAINVSMAVA FLLVFAFLRL QPINDRVYFP KWYLRGMRDS PVSSGAAVQK  60
   61 VVNLNMRSYL KFLSWMPAAL KMPEDELINH AGLDSAVYLR IYLTGIKIFV PISILASLVL 120
  121 FPVNWTNDTL DSMKVVHSKI DKLSISNIPY GSNRFVTHLV MAYAVTFWTC YVLFREYEII 180
  181 TTMRLRFLAS EKRRPDQFTV LVRNIPPDPD ESISELVEHF FLVNHPDHYL RHQVVYNANK 240
  241 LADLVEKKKK LQNWLDYYQL KYERNPSKRP TTKTGFLGCF GSEVDAIEYY KAEIEKIGKE 300
  301 EADERQKIMK DPQSAVPAAF VSFRSRWGAA VCAQTQQTSN PTVWITEWAP EPRDVYWNNL 360
  361 SIPFVSLTVR RLIVAVAFFF LNFFYVIPIA FVQSLASLEG IEKALPFLKP LIKIDVIKSF 420
  421 IQGFLPGIAL KVFLILLPTI LMFMSKFEGL ISQSSLERRS ASKYYIFLFF NVFLGSIVTG 480
  481 SALDQLKAYI HQSANEIPRT IGVAIPMRAT FFITYVMVDG WTGVAGEILR LRALIIFHLK 540
  541 NFFLVKTEKD REEAMDPGSI CFDWCEPRIQ LYFLLGLVYA VVTPLLLPFI LVFFGLAYVV 600
  601 YRHQIINVYN QQYESGAQFW PSVHGRIIIA LIVSQLLLIG LLSTKGFEET TPVLVVLPVL 660
  661 TFWFYKYCKN RFEPAFVRNP LQEAMRKDTL ERAREPTFDL KAYLANAYLH PVFKGREEED 720
  721 NMSISEDVGM EEVIVPTKRQ SRRNTPAQSK YEGSDTLSLP ETVHER

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..194] MSA 1.169982 View MSA. No confident structure predictions are available.
    2 View Details [195..361] FFAS03 1.15 Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen
    3 View Details [362..497] MSA 7.368996 View MSA. No confident structure predictions are available.
    4 View Details [498..662] MSA 8.372997 View MSA. No confident structure predictions are available.
    5 View Details [663..766] MSA 1.230996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.787118623292657 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0269483316710413 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle