Protein Overview: LHX5_RAT

General Information:
Name(s) found:	LHX5_RAT [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|531220\|gb\|AAA62162.1\| amino acid feature: homeodomain, bp 895 .. 1074; amino acid feature: LIM1, bp 373 .. 516; amino acid feature: LIM2, bp 550 .. 705 [NCBI NR] gi\|47606426\|sp\|P61376.1\|LHX5_RAT RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein 5; AltName: Full=Homeobox protein LIM-2 [NCBI NR] pir\|\|I61573 homeotic protein lim-2 - rat [NCBI NR] gi\|20514764\|ref\|NP_620605.1\| LIM homeobox 5 [Rattus norvegicus] [NCBI NR] gi\|149063463\|gb\|EDM13786.1\| LIM homeobox protein 5 [Rattus norvegicus] [NCBI NR] LIM/homeobox protein Lhx5 OS=Rattus norvegicus GN=Lhx5 PE=2 SV=1 [Swiss-Prot] Ensembl_locations(Chr-bp):12-38426681;12-38426681 LIM/homeobox protein Lhx5 [hmr_yeast5_DM3-1_pombe.fasta] LIM homeobox protein 5 [HMR_022704-rand.fasta] LIM homeobox protein 5 [Mus musculus]gi\|20514764\|ref\|NP_620605.1\| LIM homeobox protein 5 [Rattus norvegicus]gi\|34784227\|gb\|AAH57585.1\| LIM homeobox protein 5 [Mus musculus]gi\|47606427\|sp\|P61375\|LHX5_MOUSE LIM/homeobox protein Lhx5gi\|47606426\|sp\|P61376 [nrdb_11152004_Chlamydomonas] Tax_Id=10116 LIM/homeobox protein Lhx5 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta] (NM_139036) LIM homeobox protein 5 [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta] LIM/homeobox protein Lhx5 (LIM homeobox protein 5) (Homeobox protein LIM-2) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] LIM homeobox protein 5 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] amino acid feature: homeodomain, bp 895 .. 1074; amino acid feature: LIM1, bp 373 .. 516; amino acid feature: LIM2, bp 550 .. 705 [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Tax_Id=10116 LIM/HOMEOBOX PROTEIN LHX5 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta] LIM homeobox 5 [Rattus norvegicus] [NCBI-RefSeq_human-rat_na_04-07-2009_con_reversed.fasta] LIM/homeobox protein Lhx5 (Homeobox protein LIM-2) [nr-271106-contam.fasta] Tax_Id=10116 Gene_Symbol=Lhx5 LIM/homeobox protein Lhx5 [rat-ipi-250309-contam.fasta] LIM/homeobox protein Lhx5 OS=Rattus norvegicus GN=Lhx5 [011711_HMR.fasta]
Organism:	Rattus norvegicus
Length:	402 amino acids
Gene Ontology:
Cellular Component:	nucleus [IEA]
Biological Process:	cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation [UNKNOWN][IEA] cerebellar Purkinje cell differentiation [UNKNOWN][IEA] cerebellum development [UNKNOWN][IEA] cell proliferation in forebrain [UNKNOWN] forebrain neuron differentiation [UNKNOWN] cell-cell signaling [UNKNOWN] regulation of transcription, DNA-dependent [IEA] hippocampus development [UNKNOWN] regulation of cell proliferation [UNKNOWN]
Molecular Function:	transcription factor activity [IEA] zinc ion binding [IEA] metal ion binding [IEA] sequence-specific DNA binding [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVHCAGCER PILDRFLLNV LDRAWHIKCV QCCECKTNLS EKCFSREGKL YCKNDFFRRF  60
   61 GTKCAGCAQG ISPSDLVRKA RSKVFHLNCF TCMVCNKQLS TGEELYVIDE NKFVCKDDYL 120
  121 SSSSLKEGSL NSVSSCTDRS LSPDLQDPLQ DDPKETDNST SSDKETANNE NEEQNSGTKR 180
  181 RGPRTTIKAK QLETLKAAFA ATPKPTRHIR EQLAQETGLN MRVIQVWFQN RRSKERRMKQ 240
  241 LSALGARRHA FFRSPRRMRP LGGRLDESEM LGSTPYTYYG DYQSDYYAPG GNYDFFAHGP 300
  301 PSQAQSPADS SFLAASGPGS TPLGALEPPL AGPHGADNPR FTDMISHPDT PSPEPGLPGA 360
  361 LHPMPGEVFS GGPSPPFPMS GTSGYSGPLS HPNPELNEAA VW

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: LHX5_RAT

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: