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Protein Overview: PA1B2_RAT

General Information:
Name(s) found: PA1B2_RAT [Swiss-Prot]
Description(s) found:
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  • gi|6093640|sp|O35264.1|PA1B2_RAT RecName: Full=Platelet-activating factor acetylhydrolase IB subunit beta; AltName: Full=PAF acetylhydrolase 30 kDa subunit; Short=PAF-AH 30 kDa subunit; AltName: Full=PAF-AH subunit beta; AltName: Full=PAFAH subunit beta; [NCBI NR]
  • gi|51859418|gb|AAH81714.1| Platelet-activating factor acetylhydrolase, isoform Ib, beta subunit [Rattus norvegicus] [NCBI NR]
  • gi|2501859|gb|AAC27974.1| platelet-activating factor acetylhydrolase alpha 2 subunit [Rattus norvegicus] [NCBI NR]
  • gi|149041551|gb|EDL95392.1| platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit, isoform CRA_a [Rattus norvegicus] [NCBI NR]
  • gi|149041550|gb|EDL95391.1| platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit, isoform CRA_a [Rattus norvegicus] [NCBI NR]
  • gi|149041549|gb|EDL95390.1| platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit, isoform CRA_a [Rattus norvegicus] [NCBI NR]
  • gi|11693154|ref|NP_071782.1| platelet-activating factor acetylhydrolase, isoform Ib, beta subunit [Rattus norvegicus] [NCBI NR]
  • (O35264) Platelet-activating factor acetylhydrolase IB beta subunit (EC 3.1.1.47) (PAF acetylhydrolase 30 kDa subunit) (PAF-AH 30 kDa subunit) (PAF-AH beta subunit) (PAFAH beta subunit) (Platelet-activating factor acetylhydrolase alpha 2 subunit [Swiss-Prot]
  • Platelet-activating factor acetylhydrolase IB subunit beta OS=Rattus norvegicus GN=Pafah1b2 PE=1 SV=1 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):8-47525232 Platelet-activating factor acetylhydrolase IB beta subunit [hmr_yeast5_DM3-1_pombe.fasta]
  • platelet-activating factor acetylhydrolase alpha 2 subunit (PAF- [HMR_022704-rand.fasta]
  • platelet-activating factor acetylhydrolase alpha 2 subunit; PAF-AH alpha 2 [071204_hmrz_cont.fasta]
  • platelet-activating factor acetylhydrolase alpha 2 subunit [Rattus norvegicus]gi|40254624|ref|NP_032801.2| platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit [Mus musculus]gi|51859418|gb|AAH81714.1| Platelet-activating factor acetylh [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 Platelet-activating factor acetylhydrolase IB beta subunit [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • (NM_022387) platelet-activating factor acetylhydrolase alpha 2 subunit (PAF-AH alpha 2) [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • Platelet-activating factor acetylhydrolase IB subunit beta (PAF acetylhydrolase 30 kDa subunit) (PAF-AH 30 kDa subunit) (PAF-AH subunit beta) (PAFAH subunit beta) (Platelet-activating factor acetylhydrolase alpha 2 subunit) (PAF-AH alpha 2) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • platelet-activating factor acetylhydrolase alpha 2 subunit [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit, isoform CRA_a [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB BETA SUBUNIT [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=Pafah1b2 Platelet-activating factor acetylhydrolase IB subunit beta [rat-ipi-250309-contam.fasta]
  • Platelet-activating factor acetylhydrolase IB subunit beta OS=Rattus norvegicus GN=Pafah1b2 [011711_HMR.fasta]
    • Organism: Rattus norvegicus
    Length: 229 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [UNKNOWN][IEA]
    Biological Process: spermatogenesis [UNKNOWN][IEA]
    lipid catabolic process [IEA]
    Molecular Function: hydrolase activity, acting on ester bonds [IEA]
    protein binding [IPI]
    platelet-activating factor acetyltransferase activity [TAS]
    1-alkyl-2-acetylglycerophosphocholine esterase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGDSNPAA IPHAAEDIQG DDRWMSQHNR FVLDCKDKEP DVLFVGDSMV QLMQQYEIWR  60
   61 ELFSPLHALN FGIGGDTTRH VLWRLKNGEL ENIKPKVIVV WVGTNNHENT AEEVAGGIEA 120
  121 IVQLINTRQP QAKIIVLGLL PRGEKPNPLR QKNAKVNQLL KVSLPKLANV QLLDIDGGFV 180
  181 HSDGAISCHD MFDFLHLTGG GYAKICKPLH ELIMQLLEET PEEKQTTIA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..229] PSI-BLAST 62.0 Platelet-activating factor acetylhydrolase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.84091517928452 bayes_pls_golite062009
  • platelet-activating factor acetyltransferase activity
    		•  0.732293103277365 bayes_pls_golite062009
  • protein binding
    		•  0.564720396960066 bayes_pls_golite062009
  • hydrolase activity
    		•  0.45071330223777 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle