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Protein Overview: gi|116310357

General Information:
Name(s) found: gi|116310357 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|116310357|emb|CAH67370.1| OSIGBa0128P10.4 [Oryza sativa (indica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Indica Group
    Length: 480 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEAAAPERK RPRDGDVGPS TAASGEAQYV YLPIADALKA PGARVCLFAA VSEIGAAVRS  60
   61 RGTDFTLTLR IVDHSRASAI SVTFFADNTA LLPCVRSSGD VISLHNVVIT MHHGEFFVTY 120
  121 NKRFSSFALF EGKVSTGCIP YQHSMKYHGS KHDSEFLTHL RMWIVYNPPG LKDLELQLRS 180
  181 IKSDSTFDLV CKVLDVHEAS NGVWILYVWD GTDTPVTEFP TLDNESVSPP PLHLEGAPLP 240
  241 REVLCTLPCV GSVLRVFSNR FFKEMLHLQK GIYWARFCNM TCKQQFGMWK GILLPSSRVR 300
  301 LLSNEDGSVA DRLKLFDSRI ATQIHRQPMA SLPNASDIAD VEYERAGYTT LMESLTHGEV 360
  361 THKFKTLVRV VAAYPRGASH LCSLLAGNCC LRLTLEDPTA RIHAYIHKDD GAKFFGGFLT 420
  421 AEAVIRKMNK LLGIPEDTEE GAPSNRNPPW IWCCLKSYRL DKNDPWGSRR YRIFGTEIRD 480
  481

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..322] PSI-BLAST 88.09691 Crystal structure of human POT1 bound to telomeric single-stranded DNA (TTAGGGTTAG)
    2 View Details [323..480] FFAS03 1.36 Telomere end binding protein alpha subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.141433535514844 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.058699327370023 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle