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Protein Overview: FBpp0310950, sr-PB

General Information:
Name(s) found: FBpp0310950 [FlyBase]
sr-PB / FBpp0082967 [FlyBase]
Description(s) found:
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  • gi|24647827|ref|NP_732289.1| stripe, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|23171596|gb|AAN13756.1| stripe, isoform B [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=3R:join(13952744..13953377,13956117..13958203); ID=FBpp0310950; name=sr-PE; parent=FBgn0003499,FBtr0344633; dbxref=FlyBase:FBpp0310950,FlyBase_Annotation_IDs:CG7847-PE; MD5=bd0540dc90da6975cbba9ef83a69f607; length=906; release=r5.56; species=Dmel; [FlyBase]
  • The gene stripe is referred to in FlyBase by the symbol Dmel\sr (CG7847, FBgn0003499). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:13916525..13959471. It has the cytological map location 90E4-90F1. Based on sequence similarity, it is predicted to have molecular function</span>: RNA polymerase II transcription factor activity. There is experimental evidence that it is involved in the biological process</span>: central nervous system development; ectoderm development; somatic muscle development; germ-band shortening; muscle organ development; epithelial cell migration, open tracheal system; phagocytosis, engulfment. 61 alleles are reported. The phenotypes of these alleles are annotated with 20 unique terms, many of which group under: organ system; peripheral nervous system; portion of tissue; embryonic/larval tracheal system; nervous system; primordium; adult; germ layer; extended germ band embryo; adult somatic muscle. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • >CG7847-PB translation from_gene[CG7847 sr FBgn0003499] seq_release:3 mol_weight=98982 cds_boundaries:(3R:13,952,759..13,958,215[+]) aa_length:906 transcript_info:[CG7847-RB seq_release:3] gene_info:[gene symbol:sr FBgn0003499 gene_boundaries:(3R:13,91 [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q8IN91) CG7847-PB [DrosMelano7227.FASTAC.txt]
  • CG7847-PB, isoform B [Drosophila melanogaster]gi|24647827|ref|NP_732289.1| CG7847-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(13952744..13953377,13956117..13958203); ID=FBpp0082967; name=sr-PB; parent=FBgn0003499,FBtr0083543; dbxref=FlyBase:FBpp0082967,FlyBase_Annotation_IDs:CG7847-PB,GB_protein:AAN13756.1,REFSEQ:NP_732289,GB_protein:AAN13756; MD5=bd054 [fly-100309-contam.fasta]
  • stripe CG7847-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG7847-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(13952744..13953377,13956117..13958203); ID=FBpp0082967; name=sr-PB; parent=FBgn0003499,FBtr0083543; dbxref=FlyBase:FBpp0082967,FlyBase_Annotation_IDs:CG7847-PB,GB_protein:AAN13756.1,REFSEQ:NP_732289,GB_protein:AAN13756; MD5=bd0540dc90da6975cbba9ef83a69f607; length=906; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(13952744..13953377,13956117..13958203); ID=FBpp0082967; name=sr-PB; parent=FBgn0003499,FBtr0083543; dbxref=FlyBase:FBpp0082967,FlyBase_Annotation_IDs:CG7847-PB,GB_protein:AAN13756.1,REFSEQ:NP_732289,GB_protein:AAN13756; MD5=bd0540dc90da6975cbba9ef83a69f607; length=906; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Stripe, isoform B OS=Drosophila melanogaster GN=sr PE=4 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:join(13952744..13953377,13956117..13958203); ID=FBpp0082967; name=sr-PB; parent=FBgn0003499,FBtr0083543; dbxref=FlyBase:FBpp0082967,FlyBase_Annotation_IDs:CG7847-PB,GB_protein:AAN13756.1,REFSEQ:NP_732289,GB_protein:AAN13756,FlyMine:FBpp0082967,modMine:FBpp0082967; MD5=bd0540dc90da6975cbba9ef83a69f607; length=906; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(18127022..18127655,18130395..18132481); ID=FBpp0082967; name=sr-PB; parent=FBgn0003499,FBtr0083543; dbxref=FlyBase:FBpp0082967,FlyBase_Annotation_IDs:CG7847-PB,GB_protein:AAN13756.1,REFSEQ:NP_732289,GB_protein:AAN13756,FlyMine:FBpp0082967,modMine:FBpp0082967; MD5=bd0540dc90da6975cbba9ef83a69f607; length=906; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(18127022..18127655,18130395..18132481); ID=FBpp0310950; name=sr-PE; parent=FBgn0003499,FBtr0344633; dbxref=GB_protein:AHN57383,REFSEQ:NP_001287384,FlyBase:FBpp0310950,FlyBase_Annotation_IDs:CG7847-PE; MD5=bd0540dc90da6975cbba9ef83a69f607; length=906; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(18127022..18127655,18130395..18132481); ID=FBpp0082967; name=sr-PB; parent=FBgn0003499,FBtr0083543; dbxref=FlyBase:FBpp0082967,FlyBase_Annotation_IDs:CG7847-PB,GB_protein:AAN13756.1,REFSEQ:NP_732289,GB_protein:AAN13756,FlyMine:FBpp0082967,modMine:FBpp0082967; MD5=bd0540dc90da6975cbba9ef83a69f607; length=906; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=3R:join(18127022..18127655,18130395..18132481); ID=FBpp0310950; name=sr-PE; parent=FBgn0003499,FBtr0344633; dbxref=GB_protein:AHN57383,REFSEQ:NP_001287384,FlyBase:FBpp0310950,FlyBase_Annotation_IDs:CG7847-PE; MD5=bd0540dc90da6975cbba9ef83a69f607; length=906; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of A0A0B4KGW2, Stripe, isoform B OS=Drosophila melanogaster GN=sr PE=4 SV=1 [DROME.fasta.20160308]
  • FBpp0082967 type=protein; loc=3R:join(18127022..18127655,18130395..18132481); ID=FBpp0082967; name=sr-PB; parent=FBgn0003499,FBtr0083543; dbxref=FlyBase:FBpp0082967,FlyBase_Annotation_IDs:CG7847-PB,GB_protein:AAN13756.1,REFSEQ:NP_732289,GB_protein:AAN13756,FlyMine:FBpp0082967,modMine:FBpp0082967; MD5=bd0540dc90da6975cbba9ef83a69f607; length=906; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0310950 type=protein; loc=3R:join(18127022..18127655,18130395..18132481); ID=FBpp0310950; name=sr-PE; parent=FBgn0003499,FBtr0344633; dbxref=GB_protein:AHN57383,REFSEQ:NP_001287384,FlyBase:FBpp0310950,FlyBase_Annotation_IDs:CG7847-PE; MD5=bd0540dc90da6975cbba9ef83a69f607; length=906; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(18127022..18127655,18130395..18132481); ID=FBpp0082967; name=sr-PB; parent=FBgn0003499,FBtr0083543; dbxref=FlyBase:FBpp0082967,FlyBase_Annotation_IDs:CG7847-PB,GB_protein:AAN13756.1,REFSEQ:NP_732289,GB_protein:AAN13756,UniProt/TrEMBL:Q8IN91,FlyMine:FBpp0082967,modMine:FBpp0082967; MD5=bd0540dc90da6975cbba9ef83a69f607; length=906; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=3R:join(18127022..18127655,18130395..18132481); ID=FBpp0310950; name=sr-PE; parent=FBgn0003499,FBtr0344633; dbxref=GB_protein:AHN57383,REFSEQ:NP_001287384,FlyBase:FBpp0310950,FlyBase_Annotation_IDs:CG7847-PE,UniProt/TrEMBL:Q8IN91; MD5=bd0540dc90da6975cbba9ef83a69f607; length=906; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 906 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    intracellular [IEA]
    Biological Process: muscle organ development [IMP]
    epithelial cell migration, open tracheal system [IGI][IMP]
    central nervous system development [IMP]
    phagocytosis, engulfment [IMP]
    germ-band shortening [IMP]
    pigment metabolic process [TAS]
    ectoderm development [IMP]
    regulation of transcription [ISS]
    somatic muscle development [IMP]
    determination of muscle attachment site [TAS]
    Molecular Function: nucleic acid binding [IEA]
    zinc ion binding [IEA]
    RNA polymerase II transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMEGLETLV APTHHAFLLT ETAAAAHFNV LSFDTCLFKT STAAQSSGSP STATYLSPAQ  60
   61 FGGSHHGGAS TSSNSLNSSS TASSSSTSSS LLHYTTASAA AAAAAAAAAS ANNSVLRARN 120
  121 QTATPTQGGS PGHVAVQPSA TASSGRSSAS HLSLLNTSGQ HSPTSSAVEQ VEAHKQLIEA 180
  181 LPGDLNTPVT TSSDIPSFFG PTTVVEPPPI TGSIESEDLS LEPQVISVAS PVLSHCSPLK 240
  241 EERSTPPALA IVKEESSNNS CNMYPQHNNN NNNNNNTTSS STTTTSKQTT SESNTECVGS 300
  301 PGNHTQSHQQ QQQQLQHNNT SSSNSNCHHS HQQQQQQQQQ QHMSSPQQQY QQHQILHQQQ 360
  361 QLPNHHHHHH HHHHHHSQLQ QLQQQQQQQQ QQQQHQQQPL HQQQQLQHQQ QQQHHQQHYQ 420
  421 QHAIQHQQSQ QQASKISYRG IFTTTGNAMN AAAAAAAAAA QQQHQQQQQH QQQLPSPQLG 480
  481 VLAGPMSPPS NSLGNSWGLP SPDKTMFQPP LFSLPAHYAT MQQQQQQQQQ QQQQQQQQQA 540
  541 AGAAPSPYDD GRAAAAAAAQ HAELLGLTMD CTPLLLKQPP PSYAGASAGF PGLGDLHSSH 600
  601 EQQLQQQQYV RSQPKYQWLD SPADYAQQQQ QVQQVQQQQQ QQQTLVLPGP TSSASSSNAA 660
  661 LGVLIPKQEN YPDMQPSSNG TGYSGGSGGS SAAAAAAAAA AAAAVQLAEY SPSTSKGHEI 720
  721 LSQVYQQSTV PLKLVPVKPR KYPNRPSKTP VHERPYACPV ENCDRRFSRS DELTRHIRIH 780
  781 TGQKPFQCRI CMRSFSRSDH LTTHIRTHTG EKPFSCDICG RKFARSDEKK RHAKVHLKQR 840
  841 IKKEKVRGEQ QQQQQQQQQQ QQQQQQQQLQ QQQEQHHLSL QQHQQYQQHH LLHSADLAIV 900
  901 TSSASM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..233] deduced N/A No confident structure predictions are available.
    2 View Details [234..385] deduced N/A No confident structure predictions are available.
    3 View Details [386..480] deduced N/A No confident structure predictions are available.
    4 View Details [481..601] MSA 1.523992 View MSA. No confident structure predictions are available.
    5 View Details [602..677] deduced N/A No confident structure predictions are available.
    6 View Details [678..906] PSI-BLAST 62.0 No description for 2i13A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.31

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle