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Protein Overview: SPAC139.03

General Information:
Name(s) found: SPAC139.03 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • transcription factor, zf-fungal binuclear cluster type [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 625 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    spindle [IDALink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETTKSGSK KSGQTSRRAI HSCLACRRKK LKCDHGRPCS NCLKRSTIQS CIYIDPGKTN  60
   61 YDKRFERGSE ADELIDQLLS RVSMLEKRLN EVGTKSQSDY ENQQSHNLPS TPSADAETQR 120
  121 NIGSLSVLDD TKSQYANYSS SSHVLWHLRN YHYLNLDQDI QEENDSLISP FFFRISPNES 180
  181 AYDYLPPKKV SDILIEQFFF RCHMLINVLH RPTFYVRYND FWEKPHLRKP AFTSLLYAIY 240
  241 ASALLATPVE VQKTWALGED ERYLQVDYHQ AFRYALASSN FLFEPDLNAL QALVLCQVVF 300
  301 DSDRIRAPPS LVGLILHVAL CMGLHRDGSL YGLNPVISEI RRRVWANIVL SDLRTSETIG 360
  361 YPPQIVEGNY DTRLPSALPD EIHNVDSSVI ISEATFVNII TKVSRAYSKC LKVLLGIIAP 420
  421 NYTRLLELDR ELSNFFKELI EVNIPTSNTM HERHIRLLVS YLSNRFPILL HFPFLLKKNS 480
  481 AQFAYSHSRA LESATLALNQ LYELGSNPEY SKYSWYLWRY PPFHPCIVLL LDLLNSQKII 540
  541 YLDDERVVLL NKIFSLFPRS SGKEHYQKAW ALLQTSRAKV WEKLGLSTVD VSTTDVRLTN 600
  601 FEFFDANNLD INWDDWDAIF QHCPF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..150] PSI-BLAST 4.39794 PPR1
    2 View Details [151..255] deduced N/A No confident structure predictions are available.
    3 View Details [256..384] Pfam 19.958607 No description for PF04082.9 was found. No confident structure predictions are available.
    4 View Details [385..625] MSA 4.452997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.56444258780502 bayes_pls_golite062009
  • DNA binding
    		•  4.26146437716972 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.17369933547911 bayes_pls_golite062009
  • transcription factor activity
    		•  3.049435548132 bayes_pls_golite062009
  • binding
    		•  2.91929847152301 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.03201524223606 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.87955444697212 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.86200506906385 bayes_pls_golite062009
  • transcription activator activity
    		•  0.915626626047549 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle