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Protein Overview: SPCC757.04

General Information:
Name(s) found: SPCC757.04 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • transcription factor [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 684 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHMDSERLL FKRYLQRLFI TRILTLIRLD LSLFRRYNTN TIVGSVAYET LVDTVCDVSS  60
   61 NSTFVVKCNR QYPCTRCLKY GEACTYDERD NRKKRHSLSY LHSLESQLAR LESFIMTLKN 120
  121 SDPEGRDEML KSVVFSDHLT EPNDQEVKSE GPIEYPVFLN VQDSKTVSFY GPTSAYDLSL 180
  181 PDITKDNKTT WNFQASYSPM VSECLKLFFR YQYSQFLFVY RESFLSDYYY NFHDGFYCTE 240
  241 HLIYAICAIG ASMSDDENIS RHSKSYYDAS WQKLLEFGLD RSHLTSVQCL LCLGYYDIGM 300
  301 GNTSLGWLLS GLAFRMGQDL GFQLNPENWY IDNSPAISSA DSDIRRRVFW GSYVADKFIG 360
  361 FIMGRPTMLK RSDASIPGSN QLPEFAGLEE FKLNVTDYMS LTDFSVCDAV ALFVDLSDIA 420
  421 DSILLNMFSP TSKNRATNIN CVLSNLGKYN LELMNWHYKL PDTISWRTID LKKDRIPNLC 480
  481 AVSLYYHLIR ICLNRPFLSR KEVTANDLTP KTICTDSINE IVTVIRAHRT ANGLRYSTLY 540
  541 IVYAAIVSCS VILLLRDMCT DSELLTLNND MMFFIEVLKE CSQTWKLAQR SIVLIENTLK 600
  601 GKTNSQSTSE FVSPISDTEN GSSSQQVSEA KDIVEPSDVL DELQKFDLLP ENDDNFQTFQ 660
  661 AFYGGPPIIL SPNLYEKKLN EKTL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..175] FFAS03 2.32 PPR1
    2 View Details [176..256] deduced N/A Confident ab initio structure predictions are available.
    3 View Details [257..380] Pfam 31.823909 No description for PF04082.9 was found. No confident structure predictions are available.
    4 View Details [381..465] deduced N/A No confident structure predictions are available.
    5 View Details [466..684] MSA 2.491994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.34861813464065 bayes_pls_golite062009
  • DNA binding
    		•  4.03985756894684 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.97978190843512 bayes_pls_golite062009
  • transcription factor activity
    		•  2.87348461329489 bayes_pls_golite062009
  • binding
    		•  2.82809978070212 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.80191339934741 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.67344049333457 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.50774349911815 bayes_pls_golite062009
  • transcription activator activity
    		•  0.822069987038721 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.63

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle