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Protein Overview: SPCC550.11

General Information:
Name(s) found: SPCC550.11 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • karyopherin [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1029 amino acids

    Gene Ontology:
    Cellular Component: nuclear envelope [IDALink to PubMed article]
    nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    nuclear pore [RCALink to PubMed article]
    Biological Process: mRNA export from nucleus [ISSLink to PubMed article]
    protein import into nucleus [ISSLink to PubMed article]
    Molecular Function: GTP binding [NASLink to PubMed article]
    protein transporter activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVEHFDAT LSADPNTRTK AELSLKQLEK EPSFVLAVLQ LLSSQEISLP TQQAAVIYLK  60
   61 NRVSRSWSSI DDAPSPLDIP EEQKALFRQN ILPVLLQSPM STRSHLMAIL NIILSTDFPE 120
  121 YWPGFSEYTS NLVHSTERCE VYAGLICFHE LAKVYRWRLD DRQRDIGPLV AALFPTILQL 180
  181 GQGLINLEDN DSAEMLRLIL KTFKSVIALE LPPELLANDM ILSWIQLLLA VVQKPLPESL 240
  241 MSLEPEVRQS HVWHKCKKWA YYSLNRIFTR YGEPSSLVGD SANKYRAFAK NFITNVVPNI 300
  301 LETYIQQTIL WTQGQLWLSP RVLYFLGCFY EECVKPKSTW ALLKPHLQLL IGSFVFPQLC 360
  361 MSEEDEELWE LDPVEFIHKY IDIYDDFNSA DVAASRFLVK LASKRKKYTF MGILSFASDI 420
  421 LNQYAASPPN EKNPRQKEGA LRMVAAVSNS ILSKNSPVAG MMQDFLVAHV MPEFTSPVGY 480
  481 LRSRACEMIN RFSEIDWSDK SQLLNAYQAV LNCLQDNDLP VRIQAALALQ PLMRHLEVHD 540
  541 VMTAHVPIIM QNLLFLANEV DIDALSSCME EFVSSFSHEL TPFASQLAKQ LRNTFVKLMQ 600
  601 ETMDESTTVD DFDSLVDDKS IAAIGILNTL STMILSLENT VDVLREIEAI LLPMINFVLD 660
  661 NNIFDVYAEL FEIIDGCTFA SKEISPIMWG VYEKLQKVLK ESGIEFVEEA TPALSNFITY 720
  721 GGKEFASRPD YIAVMVDIIM QVFNSEHLAV NDRVSACKLT ELLMLNYRGL LDQYVPAFIE 780
  781 VAGNLLLVTE KPTSQTYRVF LLEVIINALY YNPSMSLGVL EMHQWTLPFF ALWFENIPSF 840
  841 TRVHDKKLSL VAILSVISLG AQQVAVAIQD SWGNIMKVMI TLLNTLPEAL AARAELEKEY 900
  901 DGETFNLSGS GWNDGIDWEA DDDEGVDDFA VEYGGPDLGG EISADVVDDF DEFEHFQGNY 960
  961 LLDEDPLFHT LLDQVDPFSL FQEFMVHLKD NSPVTLQDLV KNLEASEQQS LQRLVTEKPS1020
 1021 TLAVASDKT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run nuf2 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..908] PSI-BLAST 102.0 No description for 2ot8A was found.
    2 View Details [909..1029] MSA 1.205994 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle