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Protein Overview: SPCC1620.12c

General Information:
Name(s) found: SPCC1620.12c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • GTPase activating protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 595 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article][ISSLink to PubMed article]
    Golgi-associated vesicle [ISSLink to PubMed article]
    plasma membrane [ISSLink to PubMed article]
    Biological Process: ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    regulation of Rab GTPase activity [IEA]
    Molecular Function: Rab GTPase activator activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEISLDYSS PSLQQTEEQD RELNFIDSSM LRPTPPQESD NRLAVEKPNI QPLQGHSPVP  60
   61 SFMSTASTNI SSSKINNNQT EFEQLRDSYK SHGDLNSAIN DSRIQSIIFE LNQQCEKESI 120
  121 PVSNIDWLQW ASVPLFAYDL PPDPSNPNAT SSSPPPLTPI LELIKQNNFC IPSPCRKLVW 180
  181 QSLVSAERNE LLTLYATLST TNNSLDSSIR KIIRMQSFRG PLEPFKYSST TRHKVSTESI 240
  241 FHVLHAFTLF DTTVEYNIEP LLWLTCAFLS YMAQGNAFRS LVCFIQRGGI REFFISQSSS 300
  301 LDESLFALVW GCLGDLAPSV AISLQRIKVS SLCILYPSLA CCFADSLQLP EALRLMDLIA 360
  361 IYGLEMFVRL LVAIFLKDRD KIVNMVSHEQ WVKYLRSDVL ASYRQPLVQK YTFYTRTPVD 420
  421 LNAWVEDSLA LNIDTTQFPS YLSYHETSVS HNTYRQNNLE ELKNQNDYLT SQITNLEEGM 480
  481 VMLNKENTKL SEALSNHRVT RSEMEEATEI LKNNSADLKA QLEKQPQELE NRLLQEISIL 540
  541 KQRNQKFLKN NATSIQQIQY LDEELGKTLK QLNDLKEKHA QLQTKWKSVS EMFRN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..81] deduced N/A No confident structure predictions are available.
    2 View Details [82..203] PSI-BLAST 39.0 No description for 2qq8A was found.
    3 View Details [204..532] PSI-BLAST 4.0 Crystal structure of the dimeric regulatory domain of mouse diaphaneous-related formin (DRF), mDia1
    4 View Details [533..595] PSI-BLAST 20.522879 Heavy meromyosin subfragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  2.61658111885029 bayes_pls_golite062009
  • transporter activity
    		•  2.48700774379895 bayes_pls_golite062009
  • protein transporter activity
    		•  2.43253558241952 bayes_pls_golite062009
  • protein binding
    		•  2.13529412360404 bayes_pls_golite062009
  • clathrin binding
    		•  2.07672364145383 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.01243877392722 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.28481004323799 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.851483195437252 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  0.59334859317426 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.252495966234234 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.169755106399802 bayes_pls_golite062009
  • nuclear localization sequence binding
    		•  0.0935103343162811 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.00492507437049428 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.67

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle