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Protein Overview: SPBC21B10.03c

General Information:
Name(s) found: SPBC21B10.03c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • ataxin-2 homolog [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 791 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISSLink to PubMed article]
    cell division site [IDALink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    mitochondrion [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: regulation of translation [ISS]
    mRNA polyadenylation [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRSVSMKQ TSQRAASPNK TQGAKKWSAV AARGSKIAQS ATNDHRNVES IKVVPENRVR  60
   61 GGVAAKATDS SSNVTSLASS EENVSSVSGS AKSNNSQQRV WKTDVAISAE KRTETRQREL 120
  121 RRWMPDPEDA GVPLAGLEES TDNVEWDQFA TNEKLFGVKS HFDEDLYTSR IDRSHPKYKE 180
  181 KEQEADRIAK EIEGTVTNNI HIAEERGLKV DDSGLDEEDL YSGVHRSIDV VRNYTRSNAY 240
  241 NKNNKDQKPK NHEAPHQHPQ QKVVPPDDPA IVSHRHLALP RAPGPDSRAA ERFFNARRKA 300
  301 GPLSRREKEG QIKEFMQFSQ SLKIGSLDSK QPSSTKSVAE VKVADEKQLP DASSQATPAD 360
  361 SKEPRKEEAE KPVTSATEVS SEKVEKVDGN TSSPSKEEEK PSTEPEKPSV VTQRKETTGT 420
  421 KLGTKLNAKA ISFKPNVAAP VFTPGKFTIP SKPAPVNASR PMMPQQSNNS EASIPSTTPQ 480
  481 SPSVVSNGEN KPSSSPVFFN GPVSSEKEPI LDNFNVFKNV GEEHQGAEQI DKPFSCPPTW 540
  541 NTGPNSLQQT IANSRPEGNS GSAKKAAAAN PMIPSIVLPN SAMPSAMPMY PTPTMPYIPV 600
  601 GYPVPGYTPY MRNPSQHTSV APSPNGTPTS GNSSTVGSPM IGYMAPQFIP PYAMPQFPPS 660
  661 GNGRGASAPA TYFVPQMGGM MAYTMNGVPP MYGQYAPNNG MMNMHYPMYG DSRRSNSQRS 720
  721 FNSSNGKRSN VHKNNNASNT FSHSNASTSS SLNAAPNTTA KSSSQTAPPV SKGDATEKTE 780
  781 KDASANQEAK P

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run spc19 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] deduced N/A No confident structure predictions are available.
    2 View Details [93..234] Pfam 43.148742 No description for PF06741.4 was found. No confident structure predictions are available.
    3 View Details [235..431] deduced N/A No confident structure predictions are available.
    4 View Details [432..653] MSA 2.204996 View MSA. No confident structure predictions are available.
    5 View Details [654..791] MSA 5.181988 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle