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Protein Overview: CE00515

General Information:
Name(s) found: CE00515 [WormBase]
Description(s) found:
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  • WBGene00018842 Uncharacterized protein F54H12.2 status:Partially_confirmed UniProt:P34456 protein_id:CCD63457.1 [WormBase]
  • gi|465916|sp|P34456.1|YMD2_CAEEL RecName: Full=Uncharacterized protein F54H12.2 [NCBI NR]
  • gi|17553626|ref|NP_498735.1| hypothetical protein F54H12.2 [Caenorhabditis elegans] [NCBI NR]
  • gi|15145363|gb|AAK84536.1|L25599_2 Hypothetical protein F54H12.2 [Caenorhabditis elegans] [NCBI NR]
  • Uncharacterized protein F54H12.2 OS=Caenorhabditis elegans GN=F54H12.2 PE=4 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE00515 WBGene00018842 status:Partially_confirmed SW:P34456 protein_id:AAK84536.1 [wormpep150.fasta]
  • 00515 WBGene00018842 status:Predicted SW:P34456 protein_id:AAK84536.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • predicted CDS, putative cytoplasmic protein family member (3J53) [Caenorhabditis elegans]gi|15145363|gb|AAK84536.1| Hypothetical protein F54H12.2 [Caenorhabditis elegans]gi|465916|sp|P34456|YMD2_CAEEL Hypothetical protein F54H12.2 in chromosome III [nrdb_11152004_Chlamydomonas]
  • 00515 WBGene00018842 status:Partially_confirmed SW:P34456 protein_id:AAK84536.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • status:Predicted SW:P34456 protein_id:AAK84536.1 [wormpep115.fasta.reversed]
  • CE00515 status:Predicted SW:P34456 protein_id:AAK84536.1 [wormpep80.hongbin]
  • CE00515 WBGene00018842 status:Partially_confirmed UniProt:YMD2_CAEEL protein_id:AAK84536.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE00515 WBGene00018842 status:Partially_confirmed UniProt:YMD2_CAEEL protein_id:AAK84536.1| [wormORF-contam.fasta]
  • Hypothetical protein F54H12.2 [nr-271106-contam.fasta]
  • Hypothetical protein F54H12.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F54H12.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE00515 WBGene00018842 status:Partially_confirmed UniProt:P34456 protein_id:AAK84536.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE00515 WBGene00018842 status:Partially_confirmed UniProt:P34456 protein_id:CCD63457.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE00515 WBGene00018842 status:Partially_confirmed UniProt:P34456 protein_id:CCD63457.1 Uncharacterized protein F54H12.2 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 419 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: deoxyribonucleoside diphosphate metabolic process [IEALink to PubMed article]
    oxidation reduction [IEALink to PubMed article]
    Molecular Function: ribonucleoside-diphosphate reductase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGTQTCIQN SRWTVVNLKN AFQAEGPWEF VLGNNSRSYL NLKRTYLVYT FNITDQNGAI  60
   61 VNIPNPITKD SLVYAPINNI AHSIVKNFSL HINSQLAYHN SSNYAYKAYF ENALMYGKEI 120
  121 KNSTLTAAGY FHEDEIGTPT SKGFLNRCGT GTTQVAANIS LDLMNQPRVL LNSCNVKLTA 180
  181 YPNNSEFLIE AYNHGQQKFK FNVTDVYALV NEFDLTDGLS NELEAAIIEH KMIQYPMISS 240
  241 QVRSFYIDGG RFDAPANTLF TSKMPRRLFL GLVSSEAYNG SFGTTPFNFK PYGVTDVHID 300
  301 YCGQTIPGRP MNLDFENNKF VEAYVQLQET LGHTRNNFSC NSIDIGMFRS KGYTIFGFEL 360
  361 SPVAQDNNLF ELVRQTNVSV RLNFKKETPP GGLYCVVYAE FDQIFSLDFM RNPIVDSIV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] MSA 1.010976 View MSA. No confident structure predictions are available.
    2 View Details [103..215] deduced N/A No confident structure predictions are available.
    3 View Details [216..255] MSA 1.013991 View MSA. No confident structure predictions are available.
    4 View Details [256..344] deduced N/A No confident structure predictions are available.
    5 View Details [345..419] MSA 1.012988 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle