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Protein Overview: CE05155

General Information:
Name(s) found: CE05155 [WormBase]
Description(s) found:
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  • WBGene00007101 Putative pseudouridine synthase B0024.11 status:Partially_confirmed UniProt:Q17426 protein_id:CAA94883.1 [WormBase]
  • pir||T18646 hypothetical protein B0024.11 - Caenorhabditis elegans [NCBI NR]
  • gi|3873676|emb|CAA94883.1| C. elegans protein B0024.11, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|2501604|sp|Q17426.1|YQ4B_CAEEL RecName: Full=Putative pseudouridine synthase B0024.11 [NCBI NR]
  • gi|17557232|ref|NP_505653.1| hypothetical protein B0024.11 [Caenorhabditis elegans] [NCBI NR]
  • Putative pseudouridine synthase B0024.11 OS=Caenorhabditis elegans GN=B0024.11 PE=3 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE05155 WBGene00007101 Uncharacterized protein family UPF0024 status:Partially_confirmed SW:Q17426 protein_id:CAA94883.1 [wormpep150.fasta]
  • 05155 WBGene00007101 Uncharacterized protein family UPF0024 status:Partially_confirmed SW:Q17426 protein_id:CAA94883.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • pseudouridylates U2 snRNA at position 35 like (64.6 kD) (5K798) [Caenorhabditis elegans]gi|3873676|emb|CAA94883.1| Hypothetical protein B0024.11 [Caenorhabditis elegans]gi|7494706|pir||T18646 hypothetical protein B0024.11 - Caenorhabditis elegansgi|250 [nrdb_11152004_Chlamydomonas]
  • Uncharacterized protein family UPF0024 status:Partially_confirmed SW:Q17426 protein_id:CAA94883.1 [wormpep115.fasta.reversed]
  • CE05155 Uncharacterized protein family UPF0024 status:Partially_confirmed SW:Q17426 protein_id:CAA94883.1 [wormpep80.hongbin]
  • CE05155 WBGene00007101 Uncharacterized protein family UPF0024 status:Partially_confirmed UniProt:YQ4B_CAEEL protein_id:CAA94883.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE05155 WBGene00007101 Uncharacterized protein family UPF0024 status:Partially_confirmed UniProt:YQ4B_CAEEL protein_id:CAA94883.1| [wormORF-contam.fasta]
  • B0024.11 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein B0024.11 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Putative pseudouridine synthase B0024.11 [nr-271106-contam.fasta]
  • CE05155 WBGene00007101 Uncharacterized protein family UPF0024 status:Partially_confirmed UniProt:Q17426 protein_id:CAA94883.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE05155 WBGene00007101 status:Partially_confirmed UniProt:Q17426 protein_id:CAA94883.1 Putative pseudouridine synthase B0024.11 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 577 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tRNA processing [IEALink to PubMed article]
    Molecular Function: pseudouridylate synthase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METEFGLTEY ASEHTITPVP CLLKEMYSDF IVQEILADHT VLAIPSPDVV LESTGSKKED  60
   61 IEIEECVAKP DCISEETLAA LNDRFSTKGD PVLVKVDDLS KEDRKSIHHF IRERYAGVLI 120
  121 TETKEDGILV SHGHTKSSRK RKLWDEKVPK ECHFTICKEN KETSFACQLI AKFLNVGPNN 180
  181 IRTHGIKDKR AVTSQRVSVT KVHERTILDL NSKLRGIRVF GCEYKDDPVQ MGAHWGNRFS 240
  241 IVLRSLPDDS EQLLHQRLET FQNTGFINYF GTQRFGSRSS TTAEIGLAIV KRDWEKAVKM 300
  301 IMTNAMPDHL GYGSVGYAAK CFSQTGDARK AFSKLKGAQA FATVEGNILK CLSKGGTWQN 360
  361 CITEAIPIQS RSLYVHAYQS LIWNKVASRR VKEYGTRVHE SDVGANGFSL GEHATHYDIH 420
  421 IPLPGENLPF EGSYGAKWIS ELLEEDGLTQ SSFTALKDRF SLGESSRCLF VEAKELKWKF 480
  481 IRYGNARDLL QDGLQTRAIP EAEQKGPLLA LQIQFSLISG SYATVALREV TGSDMGKKAM 540
  541 RDASFKTRGD DEKTEENVLE EKGSDDANEL NLVSEDQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] MSA 2.072993 View MSA. No confident structure predictions are available.
    2 View Details [97..577] PSI-BLAST 90.0 Crystal Structure of the Putative tRNA pseudouridine synthase D (TruD) from Methanosarcina mazei, Northeast Structural Genomics Target MaR1


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle