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Protein Overview: prx-13

General Information:
Name(s) found: prx-13 / CE28290 [WormBase]
Description(s) found:
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  • WBGene00004198 locus:prx-13 Probable peroxisomal membrane protein PEX13 status:Confirmed UniProt:Q19951 protein_id:CCD66278.1 [WormBase]
  • gi|21431821|sp|Q19951.2|PEX13_CAEEL RecName: Full=Probable peroxisomal membrane protein PEX13; AltName: Full=Peroxin-13 [NCBI NR]
  • gi|17533615|ref|NP_495513.1| PeRoXisome assembly factor family member (prx-13) [Caenorhabditis elegans] [NCBI NR]
  • gi|14574158|gb|AAC46665.2| Peroxisome assembly factor protein 13 [Caenorhabditis elegans] [NCBI NR]
  • (Q19951) Probable peroxisomal membrane protein PEX13 (Peroxin-13) [Swiss-Prot]
  • Probable peroxisomal membrane protein PEX13 OS=Caenorhabditis elegans GN=prx-13 PE=3 SV=2 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE28290 WBGene00004198 locus:prx-13 status:Confirmed SW:Q19951 protein_id:AAC46665.2 [wormpep150.fasta]
  • 28290 WBGene00004198 locus:prx-13 status:Confirmed SW:Q19951 protein_id:AAC46665.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • biogenesis factor 13, PeRoXisome assembly factor PRX-13 (35.8 kD) (prx-13) [Caenorhabditis elegans]gi|14574158|gb|AAC46665.2| Peroxisome assembly factor protein 13 [Caenorhabditis elegans]gi|21431821|sp|Q19951|PEXD_CAEEL Probable peroxisomal membrane pr [nrdb_11152004_Chlamydomonas]
  • locus:prx-13 status:Confirmed SW:Q19951 protein_id:AAC46665.2 [wormpep115.fasta.reversed]
  • CE28290 status:Partially_confirmed SW:Q19951 protein_id:AAC46665.2 [wormpep80.hongbin]
  • CE28290 WBGene00004198 locus:prx-13 status:Confirmed UniProt:Q19951 protein_id:AAC46665.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE28290 WBGene00004198 locus:prx-13 status:Confirmed UniProt:Q19951 protein_id:AAC46665.2| [wormORF-contam.fasta]
  • PeRoXisome assembly factor family member (prx-13) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Probable peroxisomal membrane protein PEX13 (Peroxin-13) [nr-271106-contam.fasta]
  • Peroxisome assembly factor protein 13 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE28290 WBGene00004198 locus:prx-13 status:Confirmed UniProt:Q19951 protein_id:CCD66278.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE28290 WBGene00004198 locus:prx-13 status:Confirmed UniProt:Q19951 protein_id:CCD66278.1 Probable peroxisomal membrane protein PEX13 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 330 amino acids

    Gene Ontology:
    Cellular Component: peroxisome [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: nematode larval development [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    protein import into peroxisome matrix, docking [IEALink to PubMed article]
    growth [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPPTNQPP PLPPRSFDNQ MSNPMINTGF GYGGGYGMNT FPGSGMYGGG GMYGGGMGYG  60
   61 GFGGGFNHMG YGQGPDSNFA RLAEEQSRGA FQSIESVVNA VSSVANMLNS THNAVYSSFR 120
  121 AVIGVVEQFG RLKTQLSSVV VSLAVFRWVY RFWRWLLVML KLKPASYASA AEMAWGTSQP 180
  181 YATDVLGATR TPASVNWPAA LFWVVAIGGP WLIYRCVSQM VQAAEEKRKW ATGAAPHYTA 240
  241 QALFDFQASN EQELSFMNGE TLRVAPKEEQ PRVRGWLLAS VADGSRIGLV PINYVRIVGK 300
  301 QSQSPPLTQQ SNLDTFVNAF PARDLNSNIQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..160] Pfam 19.537602 No description for PF04088.4 was found. No confident structure predictions are available.
    2 View Details [161..330] PSI-BLAST 23.522879 No description for 2h8hA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.44124316661125 bayes_pls_golite062009
  • protein binding
    		•  1.98649667547181 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.67112127425228 bayes_pls_golite062009
  • actin binding
    		•  0.75525840382431 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle