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Protein Overview: CE33102

General Information:
Name(s) found: CE33102 [WormBase]
Description(s) found:
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  • WBGene00018700 locus:lmd-3 status:Confirmed UniProt:H2L004 protein_id:CCD70814.1 [WormBase]
  • gi|32566778|ref|NP_505175.2| hypothetical protein F52E1.13 [Caenorhabditis elegans] [NCBI NR]
  • gi|27374485|gb|AAO12424.1| Hypothetical protein F52E1.13b [Caenorhabditis elegans] [NCBI NR]
  • [wormpep104.fasta]
  • CE33102 WBGene00018700 status:Confirmed TR:Q9TY02 protein_id:AAO12424.1 [wormpep150.fasta]
  • 33102 WBGene00018700 status:Confirmed TR:Q9TY02 protein_id:AAO12424.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative N-myristoylated nuclear protein family member of eukaryotic origin (49.2 kD) (5I896) [Caenorhabditis elegans]gi|27374485|gb|AAO12424.1| Hypothetical protein F52E1.13b [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Confirmed TR:Q9TY02 protein_id:AAO12424.1 [wormpep115.fasta.reversed]
  • CE33102 WBGene00018700 status:Confirmed UniProt:Q9TY02_CAEEL protein_id:AAO12424.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE33102 WBGene00018700 status:Confirmed UniProt:Q9TY02_CAEEL protein_id:AAO12424.1| [wormORF-contam.fasta]
  • Hypothetical protein F52E1.13b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F52E1.13b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE33102 WBGene00018700 status:Confirmed UniProt:Q9TY02 protein_id:AAO12424.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE33102 WBGene00018700 status:Confirmed UniProt:H2L004 protein_id:CCD70814.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE33102 WBGene00018700 locus:lmd-3 status:Confirmed UniProt:H2L004 protein_id:CCD70814.1 [wormpep246-ecoli-contam.fasta]
  • Isoform of H2L003, LysM Domain (Peptidoglycan binding) protein OS=Caenorhabditis elegans GN=lmd-3 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 440 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cell wall macromolecule catabolic process [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGANESALHG EDEATVPVRR RAHTSYTRSA PDYFGSPSSI KNFSNNMNNN NNNNDEKHKN  60
   61 SNVILTEFDV KQMMARSRAD TVCVSSLRRQ SSEEAEKSIL ETVRQTGSDG EEEASGMSKK 120
  121 GSITSRKSSG SHDSGVGTRP NSPIASNLHM PSSSNNDEVI EFKVPEITVS LAEDTSNSEE 180
  181 QKKKRNIKRA IMKKVFKKKS AKAIEMRTRS KSLGSNAIYS SEKSTPLFGS SLLNREWELV 240
  241 TVSEMCRRLS LDQELELPIP DGAATSQILD ELMIRQVMDI LPPRAEGYPW VNIYNSEKHG 300
  301 FSLATMYRKM AEFDEDLSPV LLIIRDTKEH VFGAVVSSAI RPNDHFFGTG DSCLLWRFTG 360
  361 EVPHTRELRQ YNWTGDNQYF VNAAKDSLSI GAGSGRNGLW LDADLNHGSS QKCETFDNEP 420
  421 LCGDDQDFII QFIEAYGFRM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..264] MSA 2.157993 View MSA. No confident structure predictions are available.
    2 View Details [265..440] Pfam 73.920819 No description for PF07534.7 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle