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Protein Overview: ben-1

General Information:
Name(s) found: ben-1 / CE33770 [WormBase]
Description(s) found:
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  • WBGene00000248 locus:ben-1 status:Partially_confirmed UniProt:Q18817 protein_id:CAB00853.4 [WormBase]
  • gi|71983645|ref|NP_497728.2| BENzimidazole resistant family member (ben-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|32697980|emb|CAB00853.4| C. elegans protein C54C6.2, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|226737|prf||1604364A beta tubulin [NCBI NR]
  • [wormpep104.fasta]
  • Hypothetical protein C54C6.2 [Caenorhabditis elegans]gi|226737|prf||1604364A beta tubulin [nrdb_11152004_Chlamydomonas]
  • CE33770 WBGene00000248 locus:ben-1 tubulin status:Partially_confirmed TR:Q18817 protein_id:CAB00853.4 [wormpep150.fasta]
  • 33770 WBGene00000248 locus:ben-1 tubulin status:Partially_confirmed TR:Q18817 protein_id:CAB00853.4 [wormpep130-phg-ecoli-orf-rand.fasta]
  • locus:ben-1 tubulin status:Partially_confirmed TR:Q18817 protein_id:CAB00853.4 [wormpep115.fasta.reversed]
  • CE33770 WBGene00000248 locus:ben-1 tubulin status:Partially_confirmed UniProt:Q18817_CAEEL protein_id:CAB00853.4 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE33770 WBGene00000248 locus:ben-1 tubulin status:Partially_confirmed UniProt:Q18817_CAEEL protein_id:CAB00853.4| [wormORF-contam.fasta]
  • beta tubulin [nr-271106-contam.fasta]
  • C54C6.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein C54C6.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE33770 WBGene00000248 locus:ben-1 tubulin status:Partially_confirmed UniProt:Q18817 protein_id:CAB00853.4 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE33770 WBGene00000248 locus:ben-1 status:Partially_confirmed UniProt:Q18817 protein_id:CAB00853.4 [wormpep246-ecoli-contam.fasta]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=ben-1 PE=1 SV=3 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 444 amino acids

    Gene Ontology:
    Cellular Component: protein complex [IEALink to PubMed article]
    microtubule [IEALink to PubMed article][ISSLink to PubMed article]
    Biological Process: protein polymerization [IEALink to PubMed article]
    pronuclear migration [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    chemosensory behavior [IMPLink to PubMed article]
    microtubule-based process [IEALink to PubMed article][ISSLink to PubMed article]
    Molecular Function: GTP binding [IEALink to PubMed article]
    GTPase activity [IEALink to PubMed article]
    structural molecule activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREIVHVQAG QCGNQIGAKF WEVISDEHGI QPDGTYKGES DLQLERINVY YNEANGGKYV  60
   61 PRAVLVDLEP GTMDSVRSGP FGQLFRPDNF VFGQSGAGNN WAKGHYTEGA ELVDNVLDVV 120
  121 RKEAEGCDCL QGFQLTHSLG GGTGSGMGTL LISKIREEYP DRIMSSFSVV PSPKVSDTVV 180
  181 EPYNATLSVH QLVENTDETF CIDNEALYDI CFRTLKLSNP TYGDLNHLVS VTMSGVTTCL 240
  241 RFPGQLNADL RKLAVNMVPF PRLHFFMPGF APLSAKGAQA YRALTVAELT QQMFDAKNMM 300
  301 AACDPRHGRY LTVAAMFRGR MSMREVDDQM MNVQNKNSSY FVEWIPNNVK TAVCDIPPRG 360
  361 LKMSATFIGN STAIQELFKR ISEQFTAMFR RKAFLHWYTG EGMDEMEFTE AESNMNDLVS 420
  421 EYQQYQEATA EEDGELDGTD GDAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..444] PSI-BLAST 165.0 Tubulin:stathmin-like domain complex


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle