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Protein Overview: MIAB_BACSU, YMCB...

General Information:
Name(s) found: YMCB_BACSU [Swiss-Prot]
MIAB_BACSU [Swiss-Prot]
Description(s) found:
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  • pir||D69884 conserved hypothetical protein ymcB - Bacillus subtilis [NCBI NR]
  • gi|6226482|sp|O31778.1|MIAB_BACSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase [NCBI NR]
  • UPF0004 protein ymcB OS=Bacillus subtilis GN=ymcB PE=3 SV=1 [Swiss-Prot]
  • (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Bacillus subtilis GN=miaB PE=3 SV=1 [Swiss-Prot]
  • 509 aa - unknown; similar to unknown proteins [subtilist_Price.fasta]
  • hypothetical protein BSU17010 [Bacillus subtilis subsp. subtilis str. 168]gi|2634073|emb|CAB13574.1| ymcB [Bacillus subtilis subsp. subtilis str. 168]gi|7429888|pir||D69884 conserved hypothetical protein ymcB - Bacillus subtilisgi|6226482|sp|O31778|YMC [nrdb_11152004_Chlamydomonas]
  • UPF0004 protein ymcB [nr-271106-contam.fasta]
  • tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Bacillus subtilis (strain 168) GN=miaB PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Bacillus subtilis
    Length: 509 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEKQKLESG QVHPSDKKSE KDYSKYFEAV YIPPSLKDAK KRGKEAVTYH NDFKISEQFK  60
   61 GLGDGRKFYI RTYGCQMNEH DTEVMAGIFM ALGYEATNSV DDANVILLNT CAIRENAENK 120
  121 VFGELGHLKA LKKNNPDLIL GVCGCMSQEE SVVNRILKKH PFVDMIFGTH NIHRLPELLS 180
  181 EAYLSKEMVV EVWSKEGDVI ENLPKVRNGK IKGWVNIMYG CDKFCTYCIV PYTRGKERSR 240
  241 RPEDIIQEVR RLASEGYKEI TLLGQNVNAY GKDFEDMTYG LGDLMDELRK IDIPRIRFTT 300
  301 SHPRDFDDRL IEVLAKGGNL LDHIHLPVQS GSSEVLKLMA RKYDRERYME LVRKIKEAMP 360
  361 NASLTTDIIV GFPNETDEQF EETLSLYREV EFDSAYTFIY SPREGTPAAK MKDNVPMRVK 420
  421 KERLQRLNAL VNEISAKKMK EYEGKVVEVL VEGESKNNPD ILAGYTEKSK LVNFKGPKEA 480
  481 IGKIVRVKIQ QAKTWSLDGE MVGEAIEVK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..207] FFAS03 0.97 GLUTAMATE MUTASE (B12-BINDING SUBUNIT), NMR, MINIMIZED AVERAGE STRUCTURE
    2 View Details [208..509] PSI-BLAST 61.69897 No description for 2qgqA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.16375783444325 bayes_pls_golite062009
  • catalytic activity
    		•  0.424166454243546 bayes_pls_golite062009
  • protein binding
    		•  0.364026609385037 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle