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Protein Overview: KNAT5_ARATH

General Information:
Name(s) found: KNAT5_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||T04641 homeobox protein 1 - Arabidopsis thaliana [NCBI NR]
  • gi|7270108|emb|CAB79922.1| homeodomain containing protein 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|3858938|emb|CAA16585.1| homeodomain containing protein 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|2506031|dbj|BAA22602.1| homeodomein containing protein 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|17224610|gb|AAL37042.1|AF306661_1 homeodomain transcription factor KNAT5 [Arabidopsis thaliana] [NCBI NR]
  • gi|15236649|ref|NP_194932.1| KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5); transcription activator/ transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|12644283|sp|P48002.2|KNAT5_ARATH RecName: Full=Homeobox protein knotted-1-like 5; AltName: Full=Protein KNAT5; AltName: Full=Homeodomain-containing protein 1 [NCBI NR]
  • gi|109946421|gb|ABG48389.1| At4g32040 [Arabidopsis thaliana] [NCBI NR]
  • Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2 [Swiss-Prot]
  • (P48002) Homeobox protein knotted-1 like 5 (KNAT5) (Homeodomain containing protein 1) [Swiss-Prot]
  • homeodomain containing protein 1 [Arabidopsis thaliana]gi|3858938|emb|CAA16585.1| homeodomain containing protein 1 [Arabidopsis thaliana]gi|17224610|gb|AAL37042.1| homeodomain transcription factor KNAT5 [Arabidopsis thaliana]gi|12644283|sp|P48002|HKL5_ [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Homeobox protein knotted-1-like 5 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: KNAT5 | KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5); transcription factor | chr4:15494133-15496015 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At4g32040 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • homeodomein containing protein 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Homeobox protein knotted-1-like 5 (KNAT5) (Homeodomain-containing protein 1) [nr-271106-contam.fasta]
  • KNAT5 (ARABIDOPSIS THALIANA HOMEOBOX 1 GENE); transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • homeodomain containing protein 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • homeodomain transcription factor KNAT5 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: KNAT5 | KNOTTED1-like homeobox gene 5 | chr4:15494127-15496009 FORWARD LENGTH=383 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 383 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: detection of ethylene stimulus [IEP]
    Molecular Function: transcription factor activity [ISS]
    transcription activator activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFNSSHLLP PQEDLPLRHF TDQSQQPPPQ RHFSETPSLV TASFLNLPTT LTTADSDLAP  60
   61 PHRNGDNSVA DTNPRWLSFH SEMQNTGEVR SEVIDGVNAD GETILGVVGG EDWRSASYKA 120
  121 AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDHF 180
  181 MSHYVVLLCS FKEQLQHHVC VHAMEAITAC WEIEQSLQSL TGVSPSESNG KTMSDDEDDN 240
  241 QVESEVNMFD GSLDGSDCLM GFGPLVPTER ERSLMERVKK ELKHELKQGF KEKIVDIREE 300
  301 IMRKRRAGKL PGDTTSVLKE WWRTHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR 360
  361 NWNSNSSTSS TLTKNKRKRT GKS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..179] MSA 6.653992 View MSA. No confident structure predictions are available.
    2 View Details [180..383] PSI-BLAST 4.39794 No description for 2h8rA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle