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Protein Overview: LBD12_ARATH

General Information:
Name(s) found: LBD12_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7487477|pir||T00585 hypothetical protein At2g30130 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|45330813|dbj|BAD12425.1| ASYMMETRIC LEAVES2-like gene 5 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|3150407|gb|AAC16959.1| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • gi|29427828|sp|Q8LBW3.2|LBD12_ARATH RecName: Full=LOB domain-containing protein 12; AltName: Full=ASYMMETRIC LEAVES 2-like protein 5; Short=AS2-like protein 5 [NCBI NR]
  • gi|219807086|dbj|BAH10549.1| ASYMMETRIC LEAVES2-like 5 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18402268|ref|NP_565695.1| ASL5; DNA binding / protein binding [Arabidopsis thaliana] [NCBI NR]
  • LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2 [Swiss-Prot]
  • (Q8LBW3) LOB domain protein 12 [Swiss-Prot]
  • ASYMMETRIC LEAVES2-like gene 5 protein [Arabidopsis thaliana]gi|3150407|gb|AAC16959.1| expressed protein [Arabidopsis thaliana]gi|29427828|sp|Q8LBW3|LB12_ARATH LOB domain protein 12gi|7487477|pir||T00585 hypothetical protein At2g30130 [imported] - Arab [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 LOB domain protein 12 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: PCK1, LBD12, ASL5 | ASL5 (phosphoenolpyruvate carboxykinase1) | chr2:12875817-12876761 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • expressed protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ASL5 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein At2g30130 [imported] - Arabidopsis thaliana [nr-271106-contam.fasta]
  • ASYMMETRIC LEAVES2-like gene 5 protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • LOB domain-containing protein 12 [nr-271106-contam.fasta]
  • | Symbols: ASL5, LBD12, PCK1 | Lateral organ boundaries (LOB) domain family protein | chr2:12868740-12869684 FORWARD LENGTH=193 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 193 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: shoot morphogenesis [IMP]
    leaf morphogenesis [IMP]
    Molecular Function: DNA binding [TAS]
    protein binding [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ  60
   61 RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ LAVAQAEILC IQMQNEPTLQ 120
  121 SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM 180
  181 QMQDPLKQES LWT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] Pfam 71.39794 No description for PF03195.5 was found. No confident structure predictions are available.
    2 View Details [117..193] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle