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Protein Overview: gi|30696661, gi|...

General Information:
Name(s) found: gi|9758212 [NCBI NR]
gi|30696661 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|9758212|dbj|BAB08657.1| nucleolar protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|30696661|ref|NP_850927.1| nucleolar protein, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 682 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [ISS]
    Biological Process: cell proliferation [IMP]
    leaf morphogenesis [IMP]
    root morphogenesis [IMP]
    Molecular Function: RNA binding [IEA]
    S-adenosylmethionine-dependent methyltransferase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPALTRNKKK AATKSITPPT KQLTKSKTPP MKPQTSMLKK GAKSQNKPPL KKQKKEVVEE  60
   61 EPLEDYEVTD DSDEDDEVSD GSDEDDISPA VESEEIDESD DGENGSNQLF SDDEEENDEE 120
  121 TLGDDFLEGS GDEDEEGSLD ADSDADSDDD DIVAKSDAID RDLAMQKKDA AAELEDFIKQ 180
  181 DDVHDEEPEH DAFRLPTEEE LEEEARGPPD LPLLKTRIEE IVRALKNFKA FRPKDTTRKA 240
  241 CVEQLKADLG SYYGYNSFLI GTLVEMFPPG ELMELIEAFE KQRPTSIRTN TLKTRRRDLA 300
  301 DVLLNRGVNL DPLSKWSKVG LVIYDSQVPI GATPEYLAGY YMLQGASSFL PVMALAPREN 360
  361 ERIVDVAAAP GGKTTYIAAL MKNTGLIYAN EMKVPRLKSL TANLHRMGVT NTIVCNYDGR 420
  421 ELPKVLGQNT VDRVLLDAPC SGTGIISKDE SVKITKTMDE IKKFAHLQKQ LLLAAIDMVD 480
  481 ANSKTGGYIV YSTCSIMVTE NEAVIDYALK KRDVKLVTCG LDFGRKGFTR FREHRFQPSL 540
  541 DKTRRFYPHV HNMDGFFVAK LKKMSNVKQS SEEGDDDAVE TVEQAEVSSD DDDEAEAIEE 600
  601 TEKPSVPVRQ PKERKEKKNK EKLAKSKEDK RGKKDKKSKS ENVEEPSKPR KQKKKRREWK 660
  661 NEIAQAREEK RIAMREKAKE EK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..140] MSA 5.268993 View MSA. No confident structure predictions are available.
    2 View Details [141..495] PSI-BLAST 11.522879 Crystal structure of Tt1595, a putative SAM-dependent methyltransferase from Thermus thermophillus HB8
    3 View Details [496..565] PSI-BLAST 88.045757 Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii
    4 View Details [566..682] FFAS03 1.13 No description for 2j63A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.857347609112816 bayes_pls_golite062009
  • transferase activity
    		•  0.769739415230943 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  0.648175251543522 bayes_pls_golite062009
  • methyltransferase activity
    		•  0.646052703874729 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  0.00827854656426392 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle