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Protein Overview: KDSB_ARATH

General Information:
Name(s) found: KDSB_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30695393|ref|NP_175708.2| cytidylyltransferase family [Arabidopsis thaliana] [NCBI NR]
  • gi|222424524|dbj|BAH20217.1| AT1G53000 [Arabidopsis thaliana] [NCBI NR]
  • gi|22213935|emb|CAD43603.1| putative CMP-KDO synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|12324630|gb|AAG52266.1|AC019018_3 putative deoxyoctulonosic acid synthetase; 116195-114393 [Arabidopsis thaliana] [NCBI NR]
  • 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial OS=Arabidopsis thaliana GN=KDSB PE=1 SV=1 [Swiss-Prot]
  • (Q9C920) Putative deoxyoctulonosic acid synthetase (Putative CMP-KDO synthetase) (EC 2.7.7.38) [athaliana3702.FASTAC.txt]
  • putative CMP-KDO synthetase [Arabidopsis thaliana]gi|12324630|gb|AAG52266.1| putative deoxyoctulonosic acid synthetase; 116195-114393 [Arabidopsis thaliana]gi|30695393|ref|NP_175708.2| cytidylyltransferase family [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Cytidylyltransferase family [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | cytidylyltransferase family | chr1:19748998-19750801 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • 3-deoxy-manno-octulosonate cytidylyltransferase/ nucleotidyltransferase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative deoxyoctulonosic acid synthetase; 116195-114393 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative CMP-KDO synthetase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: KDSB | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:19745330-19747133 REVERSE LENGTH=290 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 290 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDA]
    Biological Process: lipopolysaccharide biosynthetic process [IEA][ISS]
    Molecular Function: 3-deoxy-manno-octulosonate cytidylyltransferase activity [IDA]
    nucleotidyltransferase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVCSSSSSS QKTWIVNGIL AGTAIAAAIG ARAYLGRSKK FRSRVVGIIP ARYASSRFEG  60
   61 KPLVQILGKP MIQRTWERSK LATTLDHIVV ATDDERIAEC CRGFGADVIM TSESCRNGTE 120
  121 RCNEALEKLE KKYDVVVNIQ GDEPLIEPEI IDGVVKALQV TPDAVFSTAV TSLKPEDGLD 180
  181 PNRVKCVVDN RGYAIYFSRG LIPYNKSGKV NPDFPYMLHL GIQSFDSKFL KVYSELQPTP 240
  241 LQQEEDLEQL KVLENGYKMK VIKVDHEAHG VDTPDDVEKI ESLMRERNMS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..290] PSI-BLAST 42.69897 Crystal structure of CMP-KDO synthetase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polypeptide N-acetylgalactosaminyltransferase activity
    		•  2.87534754775824 bayes_pls_golite062009
  • 3-deoxy-manno-octulosonate cytidylyltransferase activity
    		•  2.75368830096228 bayes_pls_golite062009
  • catalytic activity
    		•  2.25720704697246 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  2.04393180556087 bayes_pls_golite062009
  • transferase activity
    		•  1.67251862595728 bayes_pls_golite062009
  • UDP-glycosyltransferase activity
    		•  1.51711005399931 bayes_pls_golite062009
  • cytidylyltransferase activity
    		•  1.30540294475078 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  1.21894113759929 bayes_pls_golite062009
  • UDP-N-acetylglucosamine diphosphorylase activity
    		•  0.696745721981411 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.67147527259372 bayes_pls_golite062009
  • uridylyltransferase activity
    		•  0.54930147038803 bayes_pls_golite062009
  • acetylgalactosaminyltransferase activity
    		•  0.48277064848483 bayes_pls_golite062009
  • mannose-phosphate guanylyltransferase activity
    		•  0.38929738612511 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.280335197569099 bayes_pls_golite062009
  • galactosyltransferase activity
    		•  0.21201767008409 bayes_pls_golite062009
  • glucose-1-phosphate thymidylyltransferase activity
    		•  0.204810937394121 bayes_pls_golite062009
  • guanylyltransferase activity
    		•  0.14847697203788 bayes_pls_golite062009
  • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
    		•  0.00302319544700058 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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