YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|21387125, gi|...

General Information:
Name(s) found: gi|21387125 [NCBI NR]
gi|17065014 [NCBI NR]
gi|15242856 [NCBI NR]
gi|10177045 [NCBI NR]
Description(s) found:
Found 15 descriptions.
SHOW ALL
  • gi|21387125|gb|AAM47966.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17065014|gb|AAL32661.1| Unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15242856|ref|NP_201169.1| VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10177045|dbj|BAB10457.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 447 amino acids

    Gene Ontology:
    Cellular Component: Golgi stack [ISS]
    plasma membrane [IDA]
    Biological Process: intra-Golgi vesicle-mediated transport [ISS]
    intracellular protein transport [IEA][ISS]
    Molecular Function: protein transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAELVSSAT SEKLADVDWA KNIEICELAA RDERQAKDVI KAIKKRLGSK NPNTQLYAVQ  60
   61 LLEMLMNNIG ENIHKQVIDT GVLPTLVKIV KKKSDLPVRE RIFLLLDATQ TSLGGASGKF 120
  121 PQYYTAYYEL VNAGVKFTQR PNATPVVVTA QAVPRNTLNE QLASARNEGP ATTQQRESQS 180
  181 VSPSSILQKA STALEILKEV LDAVDSQNPE GAKDEFTLDL VEQCSFQKER VMHLVMTSRD 240
  241 EKAVSKAIEL NEQLQRILNR HEDLLSGRIT VPSRSTTSNG YHSNLEPVRP ISNGDQKREL 300
  301 KASNANTESS SFISNRAHLK LEEEDEEEEP EQLFRRLRKG KARARPEDEE EPSPPQGLPG 360
  361 SAIHNERLNR PLIRPLPSEE ASRGGDSHSQ SPPVVIPPPP AKHVEREKFF KENKGDGALG 420
  421 LPGHMRGLSL HSRDGSSSRS GSVDFSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..204] PSI-BLAST 45.30103 Hrs
    2 View Details [205..269] PSI-BLAST 22.69897 ADP-ribosylation factor binding protein Gga1
    3 View Details [270..447] MSA 8.180997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.24093737575291 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.098272402754001 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle