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Protein Overview: gi|2853080, gi|7...

General Information:
Name(s) found: gi|7484914 [NCBI NR]
gi|7268749 [NCBI NR]
gi|2853080 [NCBI NR]
gi|15235064 [NCBI NR]
Description(s) found:
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  • pir||T06146 disease resistance protein homolog F24J7.90 - Arabidopsis thaliana [NCBI NR]
  • gi|7268749|emb|CAB78955.1| TMV resistance protein N-like [Arabidopsis thaliana] [NCBI NR]
  • gi|2853080|emb|CAA16930.1| TMV resistance protein N-like [Arabidopsis thaliana] [NCBI NR]
  • gi|15235064|ref|NP_193688.1| disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] [NCBI NR]
  • (O49471) TMV resistance protein N - like (TMV resistance protein N-like) [athaliana3702.FASTAC.txt]
  • TMV resistance protein N-like [Arabidopsis thaliana]gi|2853080|emb|CAA16930.1| TMV resistance protein N-like [Arabidopsis thaliana]gi|7484914|pir||T06146 disease resistance protein homolog F24J7.90 - Arabidopsis thalianagi|15235064|ref|NP_193688.1| dis [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Disease resistance protein (TIR-NBS-LRR class) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | disease resistance protein (TIR-NBS-LRR class), putative | chr4:10651972-10657100 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • TMV resistance protein N-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP binding / transmembrane receptor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | disease resistance protein (TIR-NBS-LRR class) family | chr4:10651962-10657090 FORWARD LENGTH=1167 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • TIR-NBS-LRR class disease resistance protein OS=Arabidopsis thaliana GN=F24J7.90 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1167 amino acids

    Gene Ontology:
    Cellular Component: intrinsic to membrane [IEA]
    Biological Process: defense response signaling pathway, resistance gene-dependent [IDA]
    defense response [ISS]
    Molecular Function: ATP binding [IEA]
    transmembrane receptor activity [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSSSVVSS VPQQHQVFLN FRGDELRNNF VSHLDKALRG KQINVFIDEA VEKGENLDNL  60
   61 FKEIEKSRIA LAIISQKYTE SKWCLNELVK MKELEGKLVT IPIFYNVEPA TVRYQKEAFG 120
  121 AALTKTQEND SDGQMKKWKE ALTYVSLLVG FPFNSKSKEK ETTLIDKIVD AVLQKLSKIS 180
  181 SEESTSGSVD QGRGEEVEEA KADKISGLNQ RLKELEEKVA ITGDKRDETR IVEVVGMPGI 240
  241 GKSTLLKAFY ETWKTRFLSS ALLQNISELV KAMGLGRLTG MLLKELLPDE NIDEETYEPY 300
  301 KEKLLKNTVF IVLDGISDET HIQKLLKDHR KWAKKGSKIV IARRAVTRDL LHEDSMVRYT 360
  361 YFVPLLSHRD GLNHFCHYAF RHFAAHQNNK EAFMKESKEF VRYARGHPLI LKLLGEELRE 420
  421 KSLSYWEEKL KSLPKSLSQN IRDRVLQVTY DELSQVQKDA FLDIACFRSH DLVYVKSLLD 480
  481 SSGPAFSKAT VTIDALKDMF MIYISDSRVE MHDLLYTFAM ELGPEARDDD GRGRHRIWHH 540
  541 HNQDNKGRLN RLLKRPGGST SVRSFFLDMY VMKTDVTLGT DYLKNMRNLR YLKFYSSHCP 600
  601 QECTPKENIH IPGELELPLE EVRCLHWLNF PKDELPQDFI PKNLVDLKLP YSKIRQIWRE 660
  661 EKDAPKLRWV DLNHSSKLEN LSGLSQALNL ERLNLEGCTA LKTLLLGPEN MASLVFLNLK 720
  721 GCTGLESLPK INLRSLKTLI LSNCSNLEEF WVISETLYTL YLDGTAIKTL PQDMVKLTSL 780
  781 VKLYMKDCEM LVKLPEEFDK LKVLQELVCS GCKRLSSLPD VMKNMQCLQI LLLDGTAITK 840
  841 IPHISSLERL CLSRNEKISC LSNDIRLLSQ LKWLDLKYCT KLVSIPELPT NLQCLDANGC 900
  901 ESLTTVANPL ATHLPTEQIH STFIFTNCDK LDRTAKEGFV PEALFSTCFP GCEVPSWFCH 960
  961 EAVGSVLKLN LLPHWNENRF VGIALCAVVG SLPNCQEQTN SCSVTCTFNI ASKDSKKGDP1020
 1021 YKISFDRLVG RWNKHGNKLD KKGNKLKKTE SDHVFICYTR CSNSIKCLQD QHSGTCTPTE1080
 1081 AFLEFGVTDK ESRLEVLKCG LRLVYASDEP QKTNSDMDLS LSSSDSTPTR NGSSNTTTSS1140
 1141 GSVSTNTIRE EDSNILHEAQ SQNGRGL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..191] Pfam 49.60206 No description for PF01582.12 was found. No confident structure predictions are available.
    2 View Details [192..595] PSI-BLAST 11.0 Structure of the apoptotic protease-activating factor 1 bound to ADP
    3 View Details [596..1167] PSI-BLAST 26.0 No description for 3cigA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle