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Protein Overview: gi|225897886, gi...

General Information:
Name(s) found: gi|92856632 [NCBI NR]
gi|8844123 [NCBI NR]
gi|41619084 [NCBI NR]
gi|25294092 [NCBI NR]
gi|225897886 [NCBI NR]
gi|15221419 [NCBI NR]
Description(s) found:
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  • gi|92856632|gb|ABE77411.1| At1g06180 [Arabidopsis thaliana] [NCBI NR]
  • gi|8844123|gb|AAF80215.1|AC025290_4 Identical to the myb protein from Arabidopsis thaliana gb|Z50869 and contains a myb-like DNA binding PF|00249 domain [NCBI NR]
  • gi|41619084|gb|AAS10020.1| MYB transcription factor [Arabidopsis thaliana] [NCBI NR]
  • pir||D86197 hypothetical protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|225897886|dbj|BAH30275.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15221419|ref|NP_172108.1| ATMYB13 (MYB DOMAIN PROTEIN 13); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • (Q9LNC9) F9P14.4 protein [athaliana3702.FASTAC.txt]
  • myb family transcription factor [Arabidopsis thaliana]gi|41619084|gb|AAS10020.1| MYB transcription factor [Arabidopsis thaliana]gi|25294092|pir||D86197 hypothetical protein [imported] - Arabidopsis thalianagi|8844123|gb|AAF80215.1| Identical to the myb [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Myb family transcription factor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: AtMYBlfgn, AtMYB13, ATMYB13 | ATMYB13 (myb domain protein 13); DNA binding / transcription factor | chr1:1889509-1891088 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • MYB transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g06180 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATMYB13; DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Identical to the myb protein from Arabidopsis thaliana gb|Z50869 and contains a myb-like DNA binding PF|00249 domain [nr-271106-contam.fasta]
  • | Symbols: ATMYB13, ATMYBLFGN, MYB13 | myb domain protein 13 | chr1:1889510-1891089 FORWARD LENGTH=246 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g06180 OS=Arabidopsis thaliana GN=F9P14.4 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 246 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to gibberellin stimulus [IEP]
    response to salt stress [IEP]
    regulation of transcription, DNA-dependent [ISS]
    response to jasmonic acid stimulus [IEP]
    response to salicylic acid stimulus [IEP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRPCCEKI GLKKGPWSAE EDRILINYIS LHGHPNWRAL PKLAGLLRCG KSCRLRWINY  60
   61 LRPDIKRGNF TPHEEDTIIS LHQLLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLHHSQ 120
  121 DQNNKEDFVS TTAAEMPTSP QQQSSSSADI SAITTLGNNN DISNSNKDSA TSSEDVLAII 180
  181 DESFWSEVVL MDCDISGNEK NEKKIENWEG SLDRNDKGYN HDMEFWFDHL TSSSCIIGEM 240
  241 SDISEF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..185] PSI-BLAST 33.69897 c-Myb, DNA-binding domain
    2 View Details [186..246] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle