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Protein Overview: gi|67633400, gi|...

General Information:
Name(s) found: gi|9502427 [NCBI NR]
gi|67633400 [NCBI NR]
gi|25289990 [NCBI NR]
gi|18396939 [NCBI NR]
Description(s) found:
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  • gi|9502427|gb|AAF88126.1|AC021043_19 Putative cysteine proteinase [Arabidopsis thaliana] [NCBI NR]
  • gi|67633400|gb|AAY78625.1| peptidase C1A papain family protein [Arabidopsis thaliana] [NCBI NR]
  • pir||C86413 cysteine proteinase (EC 3.4.22.-) [similarity] - Arabidopsis thaliana [NCBI NR]
  • gi|18396939|ref|NP_564320.1| peptidase C1A papain family protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9LP39) Putative cysteine proteinase [athaliana3702.FASTAC.txt]
  • peptidase C1A papain family protein [Arabidopsis thaliana]gi|25289990|pir||C86413 cysteine proteinase (EC 3.4.22.-) [similarity] - Arabidopsis thalianagi|9502427|gb|AAF88126.1| Putative cysteine proteinase [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Peptidase C1A papain family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | peptidase C1A papain family protein | chr1:10157480-10158660 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • cysteine-type endopeptidase/ cysteine-type peptidase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Putative cysteine proteinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • peptidase C1A papain family protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Papain family cysteine protease | chr1:10157494-10158674 REVERSE LENGTH=346 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Papain family cysteine protease OS=Arabidopsis thaliana GN=F28N24.27 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 346 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: cysteine-type endopeptidase activity [IEA]
    cysteine-type peptidase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFVEFVCVV LTIFFMDLKI SEATSRVALY KPSSIVDYHQ QWMIQFSRVY DDEFEKQLRL  60
   61 QVLTENLKFI ESFNNMGNQS YKLGVNEFTD WTKEEFLATY TGLRGVNVTS PFEVVNETKP 120
  121 AWNWTVSDVL GTNKDWRNEG AVTPVKSQGE CGGCWAFSAI AAVEGLTKIA RGNLISLSEQ 180
  181 QLLDCTREQN NGCKGGTFVN AFNYIIKHRG ISSENEYPYQ VKEGPCRSNA RPAILIRGFE 240
  241 NVPSNNERAL LEAVSRQPVA VAIDASEAGF VHYSGGVYNA RNCGTSVNHA VTLVGYGTSP 300
  301 EGMKYWLAKN SWGKTWGENG YIRIRRDVEW PQGMCGVAQY ASYPVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..346] PSI-BLAST 79.0 (Pro)cathepsin L

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptidase activity
    		•  4.90619850296986 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  4.64381885397949 bayes_pls_golite062009
  • endopeptidase activity
    		•  3.75054525912786 bayes_pls_golite062009
  • hydrolase activity
    		•  3.74079711298952 bayes_pls_golite062009
  • cysteine-type peptidase activity
    		•  2.71117522993364 bayes_pls_golite062009
  • cysteine-type endopeptidase activity
    		•  1.95802900199539 bayes_pls_golite062009
  • binding
    		•  1.29265216891074 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.12653729823589 bayes_pls_golite062009
  • catalytic activity
    		•  1.05972260874031 bayes_pls_golite062009
  • protein binding
    		•  0.774177093888744 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
    		•  0.649171767629235 bayes_pls_golite062009
  • thiolester hydrolase activity
    		•  0.59115205419466 bayes_pls_golite062009
  • kininogen binding
    		•  0.41283715939055 bayes_pls_golite062009
  • signal transducer activity
    		•  0.12644030784065 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.12644030784065 bayes_pls_golite062009
  • structural molecule activity
    		•  0.102555314244558 bayes_pls_golite062009
  • tubulin binding
    		•  0.0482209771629902 bayes_pls_golite062009
  • ubiquitin-specific protease activity
    		•  0.0101379718864654 bayes_pls_golite062009
  • microtubule binding
    		•  0.00635493133568055 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle