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Protein Overview: NDF5_ARATH

General Information:
Name(s) found: NDF5_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||A96596 hypothetical protein T18I3.2 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|18405348|ref|NP_564687.1| carbohydrate binding / catalytic [Arabidopsis thaliana] [NCBI NR]
  • gi|12323162|gb|AAG51558.1|AC027034_4 hypothetical protein; 3570-2351 [Arabidopsis thaliana] [NCBI NR]
  • gi|12321610|gb|AAG50849.1|AC079287_2 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • Protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 OS=Arabidopsis thaliana GN=NDF5 PE=2 SV=1 [Swiss-Prot]
  • (Q9C503) Hypothetical protein [athaliana3702.FASTAC.txt]
  • hypothetical protein T18I3.2 [imported] - Arabidopsis thalianagi|12323162|gb|AAG51558.1| hypothetical protein; 3570-2351 [Arabidopsis thaliana]gi|12321610|gb|AAG50849.1| hypothetical protein [Arabidopsis thaliana]gi|18405348|ref|NP_564687.1| expressed [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | carbohydrate binding / catalytic | chr1:20678518-20679737 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein; 3570-2351 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: NDF5 | NDH-dependent cyclic electron flow 5 | chr1:20674852-20676071 FORWARD LENGTH=354 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • NDH-dependent cyclic electron flow 5 OS=Arabidopsis thaliana GN=F7A10.12 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 354 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    membrane [IDA]
    Biological Process: positive regulation of gene expression [IMP]
    photosynthetic electron transport in photosystem I [IMP]
    Molecular Function: catalytic activity [IEA]
    carbohydrate binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVHYMNVS RSTFPLSRSS KINLSSSFAS LPLQFHKNIK RLESSVPPSA SASASPAFPI  60
   61 DVEYLRREFS GHGATFEDIG ETCIARLKLD NGSSANVMLT RGMITSYKVR VWHGGKVELL 120
  121 HTWVEQEEEE VVIRGGVSSA FRSSDSDEIS DWRLQGISGD SKDCVQMELR RSDKKIKEIE 180
  181 LKQIISLREN TLSIELSMTN KGISPIKLEG CSLVSYLTVS TPEATYAVGL EGSDFVETTP 240
  241 FLPRFGVVQG EKEEEKPGFG GEEESNYKQL NREMSRIYTC APKSFTVIDR GRRNSVVVGR 300
  301 EGFEEVYMYS PGSRLESYTK SAYVCIGPSS LLSPISLESG CVWRGVLHLH NPNS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..354] PSI-BLAST 55.154902 Hypothetical protein HI1317

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.24087518312023 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle